fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACKIH01 sp020638575 HK-STAS-PROT-2

Genome identifier: GCA_020638575.1

NCBI assembly name: ASM2063857v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, DSM-16000, Inquilinaceae, JACKIH01, JACKIH01 sp020638575

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Rhodospirillaceae

Scaffolds: 4

Genes: 3,609 Protein-coding: 3,516 RNAs: 55 pseudogenes: 38

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKIH010000001.1 MAG: Rhodospirillaceae bacterium isolate HK-STAS-PROT-2 HK-STAS-PROT-2_1, whole genome shotgun sequence 2,507
JACKIH010000002.1 MAG: Rhodospirillaceae bacterium isolate HK-STAS-PROT-2 HK-STAS-PROT-2_2, whole genome shotgun sequence 2,413
JACKIH010000003.1 MAG: Rhodospirillaceae bacterium isolate HK-STAS-PROT-2 HK-STAS-PROT-2_3, whole genome shotgun sequence 3,957,062
JACKIH010000004.1 MAG: Rhodospirillaceae bacterium isolate HK-STAS-PROT-2 HK-STAS-PROT-2_4, whole genome shotgun sequence 4,399

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory