fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA1479 sp021555045 LMO-S08

Genome identifier: GCA_021555045.1

NCBI assembly name: ASM2155504v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales_A, Casp-alpha2, UBA1479, UBA1479 sp021555045

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 9

Genes: 3,837 Protein-coding: 3,761 RNAs: 52 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAKGBY010000001.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg01, whole genome shotgun sequence 1,116,351
JAKGBY010000002.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg02, whole genome shotgun sequence 1,071,250
JAKGBY010000003.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg03, whole genome shotgun sequence 995,826
JAKGBY010000004.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg04, whole genome shotgun sequence 652,331
JAKGBY010000005.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg05, whole genome shotgun sequence 10,870
JAKGBY010000006.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg06, whole genome shotgun sequence 121,791
JAKGBY010000007.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg07, whole genome shotgun sequence 5,828
JAKGBY010000008.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg08, whole genome shotgun sequence 2,049
JAKGBY010000009.1 Alphaproteobacteria bacterium LMO-S08 Mag.05_ctg09, whole genome shotgun sequence 549

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory