fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAKGBX01 sp021555075 LMO-JJ12

Genome identifier: GCA_021555075.1

NCBI assembly name: ASM2155507v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, JAKGBX01, JAKGBX01 sp021555075

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae

Scaffolds: 10

Genes: 4,205 Protein-coding: 4,095 RNAs: 50 pseudogenes: 60

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAKGBX010000001.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg01, whole genome shotgun sequence 2,501,644
JAKGBX010000002.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg02, whole genome shotgun sequence 867,498
JAKGBX010000003.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg03, whole genome shotgun sequence 530,442
JAKGBX010000004.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg04, whole genome shotgun sequence 268,590
JAKGBX010000005.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg05, whole genome shotgun sequence 118,921
JAKGBX010000006.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg06, whole genome shotgun sequence 35,699
JAKGBX010000007.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg07, whole genome shotgun sequence 20,502
JAKGBX010000008.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg08, whole genome shotgun sequence 1,207
JAKGBX010000009.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg09, whole genome shotgun sequence 1,142
JAKGBX010000010.1 Rhodobacteraceae bacterium LMO-JJ12 Octa.02_ctg10, whole genome shotgun sequence 850

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory