fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA5701 sp021604545 DHS20C02

Genome identifier: GCA_021604545.1

NCBI assembly name: ASM2160454v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Micavibrionales, Micavibrionaceae, UBA5701, UBA5701 sp021604545

NCBI taxonomy: Bacteria, Bdellovibrionota, Bdellovibrionia, Bdellovibrionales, Pseudobdellovibrionaceae, Micavibrio

Scaffolds: 12

Genes: 2,109 Protein-coding: 2,066 RNAs: 43 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
BQJE01000001.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence01, whole genome shotgun sequence 732,057
BQJE01000002.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence02, whole genome shotgun sequence 412,338
BQJE01000003.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence03, whole genome shotgun sequence 359,534
BQJE01000004.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence04, whole genome shotgun sequence 230,702
BQJE01000005.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence05, whole genome shotgun sequence 199,591
BQJE01000006.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence06, whole genome shotgun sequence 97,783
BQJE01000007.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence07, whole genome shotgun sequence 40,394
BQJE01000008.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence08, whole genome shotgun sequence 38,104
BQJE01000009.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence09, whole genome shotgun sequence 24,063
BQJE01000010.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence10, whole genome shotgun sequence 6,673
BQJE01000011.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence11, whole genome shotgun sequence 4,055
BQJE01000012.1 MAG: Micavibrio sp. DHS20C02 DNA, sequence12, whole genome shotgun sequence 3,557

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory