fast.genomicscompare 6,575 genera of bacteria & archaea

 

RUG023 sp022482495 UW_MP_SPH2_2

Genome identifier: GCA_022482495.1

NCBI assembly name: ASM2248249v1

GTDB taxonomy: Bacteria, Spirochaetota, Spirochaetia, Sphaerochaetales, Sphaerochaetaceae, RUG023, RUG023 sp022482495

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Spirochaetales, Sphaerochaetaceae, Sphaerochaeta

Scaffolds: 14

Genes: 2,227 Protein-coding: 2,081 RNAs: 56 pseudogenes: 90

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAKVPA010000001.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0005, whole genome shotgun sequence 524,850
JAKVPA010000002.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0012, whole genome shotgun sequence 306,122
JAKVPA010000003.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0021, whole genome shotgun sequence 272,904
JAKVPA010000004.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0024, whole genome shotgun sequence 243,456
JAKVPA010000005.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0035, whole genome shotgun sequence 191,567
JAKVPA010000006.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0062, whole genome shotgun sequence 138,622
JAKVPA010000007.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0069, whole genome shotgun sequence 131,703
JAKVPA010000008.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0075, whole genome shotgun sequence 123,405
JAKVPA010000009.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0119, whole genome shotgun sequence 84,897
JAKVPA010000010.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0166, whole genome shotgun sequence 68,227
JAKVPA010000011.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0167, whole genome shotgun sequence 68,036
JAKVPA010000012.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0408, whole genome shotgun sequence 34,412
JAKVPA010000013.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0427, whole genome shotgun sequence 32,737
JAKVPA010000014.1 MAG: Sphaerochaeta sp. isolate UW_MP_SPH2_2 Ga0455827_0478, whole genome shotgun sequence 29,920

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory