fast.genomicscompare 6,575 genera of bacteria & archaea

 

MLS-D sp023228425 SO_2017_LW2 bin 84

Genome identifier: GCA_023228425.1

NCBI assembly name: ASM2322842v1

GTDB taxonomy: Bacteria, Desulfobacterota, Syntrophia, Syntrophales, UBA2210, MLS-D, MLS-D sp023228425

NCBI taxonomy: Bacteria, Thermodesulfobacteriota, Syntrophia, Syntrophales

Scaffolds: 35

Genes: 1,989 Protein-coding: 1,903 RNAs: 54 pseudogenes: 32

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JALOBE010000001.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_120_c1_LW138R_2017, whole genome shotgun sequence 188,707
JALOBE010000002.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_137_c1_LW138R_2017, whole genome shotgun sequence 177,491
JALOBE010000003.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_318_c1_LW138R_2017, whole genome shotgun sequence 120,940
JALOBE010000004.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_340_c1_LW138R_2017, whole genome shotgun sequence 116,157
JALOBE010000005.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_357_c1_LW138R_2017, whole genome shotgun sequence 112,771
JALOBE010000006.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_367_c1_LW138R_2017, whole genome shotgun sequence 111,531
JALOBE010000007.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_229_c1_LW138R_2017, whole genome shotgun sequence 97,768
JALOBE010000008.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_331_c2_LW138R_2017, whole genome shotgun sequence 97,766
JALOBE010000009.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_588_c1_LW138R_2017, whole genome shotgun sequence 87,590
JALOBE010000010.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_589_c1_LW138R_2017, whole genome shotgun sequence 87,517
JALOBE010000011.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_624_c1_LW138R_2017, whole genome shotgun sequence 85,176
JALOBE010000012.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_925_c1_LW138R_2017, whole genome shotgun sequence 68,490
JALOBE010000013.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1016_c1_LW138R_2017, whole genome shotgun sequence 64,907
JALOBE010000014.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1023_c1_LW138R_2017, whole genome shotgun sequence 61,861
JALOBE010000015.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1096_c1_LW138R_2017, whole genome shotgun sequence 61,494
JALOBE010000016.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1237_c1_LW138R_2017, whole genome shotgun sequence 57,552
JALOBE010000017.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1287_c1_LW138R_2017, whole genome shotgun sequence 56,083
JALOBE010000018.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1300_c1_LW138R_2017, whole genome shotgun sequence 55,730
JALOBE010000019.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1322_c1_LW138R_2017, whole genome shotgun sequence 55,007
JALOBE010000020.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1406_c1_LW138R_2017, whole genome shotgun sequence 52,959
JALOBE010000021.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_229_c2_LW138R_2017, whole genome shotgun sequence 44,394
JALOBE010000022.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_2047_c1_LW138R_2017, whole genome shotgun sequence 42,251
JALOBE010000023.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_2180_c1_LW138R_2017, whole genome shotgun sequence 40,566
JALOBE010000024.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_2211_c1_LW138R_2017, whole genome shotgun sequence 40,215
JALOBE010000025.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_2807_c1_LW138R_2017, whole genome shotgun sequence 34,094
JALOBE010000026.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_331_c1_LW138R_2017, whole genome shotgun sequence 21,473
JALOBE010000027.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_5460_c1_LW138R_2017, whole genome shotgun sequence 21,350
JALOBE010000028.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_6644_c1_LW138R_2017, whole genome shotgun sequence 18,510
JALOBE010000029.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_7746_c1_LW138R_2017, whole genome shotgun sequence 16,464
JALOBE010000030.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_10758_c1_LW138R_2017, whole genome shotgun sequence 12,749
JALOBE010000031.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_10939_c1_LW138R_2017, whole genome shotgun sequence 12,586
JALOBE010000032.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_12907_c1_LW138R_2017, whole genome shotgun sequence 11,027
JALOBE010000033.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_25956_c1_LW138R_2017, whole genome shotgun sequence 6,383
JALOBE010000034.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_74474_c1_LW138R_2017, whole genome shotgun sequence 2,886
JALOBE010000035.1 MAG: Syntrophales bacterium isolate SO_2017_LW2 bin 84 scaffold_1023_c2_LW138R_2017, whole genome shotgun sequence 2,675

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory