fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAGNKE01 sp023384135 PRO23

Genome identifier: GCA_023384135.1

NCBI assembly name: ASM2338413v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Micavibrionales, Micavibrionaceae, JAGNKE01, JAGNKE01 sp023384135

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 5

Genes: 2,725 Protein-coding: 2,667 RNAs: 45 pseudogenes: 13

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAHDXS010000001.1 MAG: Alphaproteobacteria bacterium isolate PRO23 NODE_3_length_1205977_cov_24.279138, whole genome shotgun sequence 1,205,977
JAHDXS010000002.1 MAG: Alphaproteobacteria bacterium isolate PRO23 NODE_6_length_871258_cov_22.685697, whole genome shotgun sequence 871,258
JAHDXS010000003.1 MAG: Alphaproteobacteria bacterium isolate PRO23 NODE_8_length_689752_cov_24.027432, whole genome shotgun sequence 689,752
JAHDXS010000004.1 MAG: Alphaproteobacteria bacterium isolate PRO23 NODE_2484_length_29404_cov_25.170738, whole genome shotgun sequence 29,404
JAHDXS010000005.1 MAG: Alphaproteobacteria bacterium isolate PRO23 NODE_5786_length_12066_cov_25.476397, whole genome shotgun sequence 12,066

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory