fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACKPC01 sp024233835 HK-STAS-SPIR-5

Genome identifier: GCA_024233835.1

NCBI assembly name: ASM2423383v1

GTDB taxonomy: Bacteria, Spirochaetota, Leptospirae, Leptospirales, Leptospiraceae, JACKPC01, JACKPC01 sp024233835

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Leptospirales, Leptospiraceae

Scaffolds: 11

Genes: 5,336 Protein-coding: 5,258 RNAs: 51 pseudogenes: 27

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKPC010000001.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_1, whole genome shotgun sequence 2,049,248
JACKPC010000002.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_2, whole genome shotgun sequence 1,199,772
JACKPC010000003.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_3, whole genome shotgun sequence 811,812
JACKPC010000004.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_4, whole genome shotgun sequence 503,887
JACKPC010000005.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_5, whole genome shotgun sequence 462,701
JACKPC010000006.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_6, whole genome shotgun sequence 399,756
JACKPC010000007.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_7, whole genome shotgun sequence 384,372
JACKPC010000008.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_8, whole genome shotgun sequence 90,722
JACKPC010000009.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_9, whole genome shotgun sequence 70,117
JACKPC010000010.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_10, whole genome shotgun sequence 31,265
JACKPC010000011.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-5 HK-STAS-SPIR-5_11, whole genome shotgun sequence 1,692

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory