fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACKPA01 sp024233865 HK-STAS-SPIR-3

Genome identifier: GCA_024233865.1

NCBI assembly name: ASM2423386v1

GTDB taxonomy: Bacteria, Spirochaetota, Leptospirae, Leptospirales, Leptospiraceae, JACKPA01, JACKPA01 sp024233865

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Leptospirales, Leptospiraceae

Scaffolds: 37

Genes: 5,437 Protein-coding: 5,345 RNAs: 43 pseudogenes: 49

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKPA010000001.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_1, whole genome shotgun sequence 1,159,307
JACKPA010000002.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_2, whole genome shotgun sequence 482,655
JACKPA010000003.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_3, whole genome shotgun sequence 391,412
JACKPA010000004.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_4, whole genome shotgun sequence 331,908
JACKPA010000005.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_5, whole genome shotgun sequence 302,716
JACKPA010000006.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_6, whole genome shotgun sequence 302,375
JACKPA010000007.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_7, whole genome shotgun sequence 290,537
JACKPA010000008.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_8, whole genome shotgun sequence 278,999
JACKPA010000009.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_9, whole genome shotgun sequence 270,327
JACKPA010000010.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_10, whole genome shotgun sequence 242,539
JACKPA010000011.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_11, whole genome shotgun sequence 240,991
JACKPA010000012.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_12, whole genome shotgun sequence 204,607
JACKPA010000013.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_13, whole genome shotgun sequence 196,424
JACKPA010000014.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_14, whole genome shotgun sequence 174,409
JACKPA010000015.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_15, whole genome shotgun sequence 162,234
JACKPA010000016.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_16, whole genome shotgun sequence 159,290
JACKPA010000017.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_17, whole genome shotgun sequence 150,979
JACKPA010000018.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_18, whole genome shotgun sequence 146,521
JACKPA010000019.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_19, whole genome shotgun sequence 111,185
JACKPA010000020.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_20, whole genome shotgun sequence 82,103
JACKPA010000021.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_21, whole genome shotgun sequence 61,782
JACKPA010000022.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_22, whole genome shotgun sequence 46,623
JACKPA010000023.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_23, whole genome shotgun sequence 45,991
JACKPA010000024.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_24, whole genome shotgun sequence 43,732
JACKPA010000025.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_25, whole genome shotgun sequence 39,767
JACKPA010000026.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_26, whole genome shotgun sequence 35,900
JACKPA010000027.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_27, whole genome shotgun sequence 22,740
JACKPA010000028.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_28, whole genome shotgun sequence 19,625
JACKPA010000029.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_29, whole genome shotgun sequence 14,072
JACKPA010000030.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_30, whole genome shotgun sequence 11,411
JACKPA010000031.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_31, whole genome shotgun sequence 11,305
JACKPA010000032.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_32, whole genome shotgun sequence 9,145
JACKPA010000033.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_33, whole genome shotgun sequence 8,134
JACKPA010000034.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_34, whole genome shotgun sequence 4,927
JACKPA010000035.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_35, whole genome shotgun sequence 3,265
JACKPA010000036.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_36, whole genome shotgun sequence 3,201
JACKPA010000037.1 MAG: Leptospiraceae bacterium isolate HK-STAS-SPIR-3 HK-STAS-SPIR-3_37, whole genome shotgun sequence 2,537

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory