fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACKOY01 sp024233935 HK-STAS-SPIR-1

Genome identifier: GCA_024233935.1

NCBI assembly name: ASM2423393v1

GTDB taxonomy: Bacteria, Spirochaetota, Leptospirae, Leptospirales, Leptonemataceae, JACKOY01, JACKOY01 sp024233935

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Spirochaetales

Scaffolds: 34

Genes: 4,153 Protein-coding: 4,093 RNAs: 44 pseudogenes: 16

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKOY010000001.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_1, whole genome shotgun sequence 549,958
JACKOY010000002.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_2, whole genome shotgun sequence 472,378
JACKOY010000003.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_3, whole genome shotgun sequence 433,188
JACKOY010000004.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_4, whole genome shotgun sequence 328,262
JACKOY010000005.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_5, whole genome shotgun sequence 257,796
JACKOY010000006.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_6, whole genome shotgun sequence 192,640
JACKOY010000007.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_7, whole genome shotgun sequence 152,933
JACKOY010000008.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_8, whole genome shotgun sequence 150,031
JACKOY010000009.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_9, whole genome shotgun sequence 146,085
JACKOY010000010.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_10, whole genome shotgun sequence 145,931
JACKOY010000011.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_11, whole genome shotgun sequence 124,678
JACKOY010000012.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_12, whole genome shotgun sequence 105,236
JACKOY010000013.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_13, whole genome shotgun sequence 103,573
JACKOY010000014.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_14, whole genome shotgun sequence 101,601
JACKOY010000015.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_15, whole genome shotgun sequence 97,385
JACKOY010000016.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_16, whole genome shotgun sequence 95,278
JACKOY010000017.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_17, whole genome shotgun sequence 91,095
JACKOY010000018.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_18, whole genome shotgun sequence 84,477
JACKOY010000019.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_19, whole genome shotgun sequence 82,828
JACKOY010000020.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_20, whole genome shotgun sequence 73,665
JACKOY010000021.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_21, whole genome shotgun sequence 72,967
JACKOY010000022.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_22, whole genome shotgun sequence 68,488
JACKOY010000023.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_23, whole genome shotgun sequence 65,648
JACKOY010000024.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_24, whole genome shotgun sequence 63,248
JACKOY010000025.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_25, whole genome shotgun sequence 62,764
JACKOY010000026.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_26, whole genome shotgun sequence 55,672
JACKOY010000027.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_27, whole genome shotgun sequence 51,403
JACKOY010000028.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_28, whole genome shotgun sequence 46,932
JACKOY010000029.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_29, whole genome shotgun sequence 45,583
JACKOY010000030.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_30, whole genome shotgun sequence 32,966
JACKOY010000031.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_31, whole genome shotgun sequence 26,911
JACKOY010000032.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_32, whole genome shotgun sequence 17,097
JACKOY010000033.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_33, whole genome shotgun sequence 6,244
JACKOY010000034.1 MAG: Spirochaetales bacterium isolate HK-STAS-SPIR-1 HK-STAS-SPIR-1_34, whole genome shotgun sequence 1,883

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory