fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA5518 sp024234165 HK-STAS-PROT-173

Genome identifier: GCA_024234165.1

NCBI assembly name: ASM2423416v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, UBA5518, UBA5518, UBA5518 sp024234165

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales

Scaffolds: 5

Genes: 3,303 Protein-coding: 3,176 RNAs: 52 pseudogenes: 75

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKOP010000001.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-173 HK-STAS-PROT-173_1, whole genome shotgun sequence 1,342,619
JACKOP010000002.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-173 HK-STAS-PROT-173_2, whole genome shotgun sequence 797,314
JACKOP010000003.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-173 HK-STAS-PROT-173_3, whole genome shotgun sequence 789,741
JACKOP010000004.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-173 HK-STAS-PROT-173_4, whole genome shotgun sequence 460,917
JACKOP010000005.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-173 HK-STAS-PROT-173_5, whole genome shotgun sequence 310,906

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory