fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA5078 sp024234365 HK-STAS-PROT-168

Genome identifier: GCA_024234365.1

NCBI assembly name: ASM2423436v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Pseudohongiellaceae, UBA5078, UBA5078 sp024234365

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales

Scaffolds: 8

Genes: 2,489 Protein-coding: 2,422 RNAs: 42 pseudogenes: 25

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKOK010000001.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-168 HK-STAS-PROT-168_1, whole genome shotgun sequence 943,072
JACKOK010000002.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-168 HK-STAS-PROT-168_2, whole genome shotgun sequence 633,636
JACKOK010000003.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-168 HK-STAS-PROT-168_3, whole genome shotgun sequence 385,900
JACKOK010000004.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-168 HK-STAS-PROT-168_4, whole genome shotgun sequence 295,186
JACKOK010000005.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-168 HK-STAS-PROT-168_5, whole genome shotgun sequence 210,541
JACKOK010000006.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-168 HK-STAS-PROT-168_6, whole genome shotgun sequence 143,855
JACKOK010000007.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-168 HK-STAS-PROT-168_7, whole genome shotgun sequence 107,312
JACKOK010000008.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-168 HK-STAS-PROT-168_8, whole genome shotgun sequence 60,357

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory