fast.genomicscompare 6,575 genera of bacteria & archaea

 

NORP240 sp024234395 HK-STAS-PROT-165

Genome identifier: GCA_024234395.1

NCBI assembly name: ASM2423439v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Pseudohongiellaceae, NORP240, NORP240 sp024234395

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales

Scaffolds: 5

Genes: 4,205 Protein-coding: 4,111 RNAs: 54 pseudogenes: 40

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKOH010000001.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-165 HK-STAS-PROT-165_1, whole genome shotgun sequence 2,206,352
JACKOH010000002.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-165 HK-STAS-PROT-165_2, whole genome shotgun sequence 1,917,248
JACKOH010000003.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-165 HK-STAS-PROT-165_3, whole genome shotgun sequence 533,456
JACKOH010000004.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-165 HK-STAS-PROT-165_4, whole genome shotgun sequence 65,115
JACKOH010000005.1 MAG: Pseudomonadales bacterium isolate HK-STAS-PROT-165 HK-STAS-PROT-165_5, whole genome shotgun sequence 43,344

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory