fast.genomicscompare 6,575 genera of bacteria & archaea

 

SHZI01 sp024234935 HK-STAS-PROT-140

Genome identifier: GCA_024234935.1

NCBI assembly name: ASM2423493v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, GCA-2729495, GCA-2729495, SHZI01, SHZI01 sp024234935

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Chromatiales

Scaffolds: 7

Genes: 2,553 Protein-coding: 2,490 RNAs: 52 pseudogenes: 11

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKNI010000001.1 MAG: Chromatiales bacterium isolate HK-STAS-PROT-140 HK-STAS-PROT-140_1, whole genome shotgun sequence 1,115,053
JACKNI010000002.1 MAG: Chromatiales bacterium isolate HK-STAS-PROT-140 HK-STAS-PROT-140_2, whole genome shotgun sequence 667,123
JACKNI010000003.1 MAG: Chromatiales bacterium isolate HK-STAS-PROT-140 HK-STAS-PROT-140_3, whole genome shotgun sequence 256,474
JACKNI010000004.1 MAG: Chromatiales bacterium isolate HK-STAS-PROT-140 HK-STAS-PROT-140_4, whole genome shotgun sequence 222,555
JACKNI010000005.1 MAG: Chromatiales bacterium isolate HK-STAS-PROT-140 HK-STAS-PROT-140_5, whole genome shotgun sequence 203,763
JACKNI010000006.1 MAG: Chromatiales bacterium isolate HK-STAS-PROT-140 HK-STAS-PROT-140_6, whole genome shotgun sequence 133,307
JACKNI010000007.1 MAG: Chromatiales bacterium isolate HK-STAS-PROT-140 HK-STAS-PROT-140_7, whole genome shotgun sequence 89,328

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory