fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACKNK01 sp024234955 HK-STAS-PROT-142

Genome identifier: GCA_024234955.1

NCBI assembly name: ASM2423495v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, JACKNK01, JACKNK01, JACKNK01, JACKNK01 sp024234955

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria

Scaffolds: 8

Genes: 3,137 Protein-coding: 3,055 RNAs: 54 pseudogenes: 28

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKNK010000001.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-142 HK-STAS-PROT-142_1, whole genome shotgun sequence 975,765
JACKNK010000002.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-142 HK-STAS-PROT-142_2, whole genome shotgun sequence 808,062
JACKNK010000003.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-142 HK-STAS-PROT-142_3, whole genome shotgun sequence 487,118
JACKNK010000004.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-142 HK-STAS-PROT-142_4, whole genome shotgun sequence 370,932
JACKNK010000005.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-142 HK-STAS-PROT-142_5, whole genome shotgun sequence 367,955
JACKNK010000006.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-142 HK-STAS-PROT-142_6, whole genome shotgun sequence 276,615
JACKNK010000007.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-142 HK-STAS-PROT-142_7, whole genome shotgun sequence 2,254
JACKNK010000008.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-142 HK-STAS-PROT-142_8, whole genome shotgun sequence 2,089

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory