fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA2383 sp024235095 HK-STAS-PROT-134

Genome identifier: GCA_024235095.1

NCBI assembly name: ASM2423509v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Competibacterales, Competibacteraceae, UBA2383, UBA2383 sp024235095

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria

Scaffolds: 7

Genes: 4,149 Protein-coding: 3,889 RNAs: 59 pseudogenes: 201

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKNC010000001.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-134 HK-STAS-PROT-134_1, whole genome shotgun sequence 2,979,502
JACKNC010000002.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-134 HK-STAS-PROT-134_2, whole genome shotgun sequence 841,268
JACKNC010000003.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-134 HK-STAS-PROT-134_3, whole genome shotgun sequence 677,340
JACKNC010000004.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-134 HK-STAS-PROT-134_4, whole genome shotgun sequence 162,792
JACKNC010000005.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-134 HK-STAS-PROT-134_5, whole genome shotgun sequence 1,713
JACKNC010000006.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-134 HK-STAS-PROT-134_6, whole genome shotgun sequence 3,453
JACKNC010000007.1 MAG: Gammaproteobacteria bacterium isolate HK-STAS-PROT-134 HK-STAS-PROT-134_7, whole genome shotgun sequence 3,138

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory