fast.genomicscompare 6,575 genera of bacteria & archaea

 

RF16 sp024400115 Horse_feces144

Genome identifier: GCA_024400115.1

NCBI assembly name: ASM2440011v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Paludibacteraceae, RF16, RF16 sp024400115

NCBI taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Paludibacteraceae

Scaffolds: 60

Genes: 1,791 Protein-coding: 1,726 RNAs: 47 pseudogenes: 18

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAKSNF010000001.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_1, whole genome shotgun sequence 162,490
JAKSNF010000002.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_2, whole genome shotgun sequence 162,396
JAKSNF010000003.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_3, whole genome shotgun sequence 148,634
JAKSNF010000004.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_4, whole genome shotgun sequence 143,788
JAKSNF010000005.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_5, whole genome shotgun sequence 94,754
JAKSNF010000006.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_6, whole genome shotgun sequence 91,612
JAKSNF010000007.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_7, whole genome shotgun sequence 84,577
JAKSNF010000008.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_8, whole genome shotgun sequence 84,074
JAKSNF010000009.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_9, whole genome shotgun sequence 81,778
JAKSNF010000010.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_10, whole genome shotgun sequence 77,861
JAKSNF010000011.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_11, whole genome shotgun sequence 76,066
JAKSNF010000012.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_12, whole genome shotgun sequence 73,159
JAKSNF010000013.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_13, whole genome shotgun sequence 67,240
JAKSNF010000014.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_14, whole genome shotgun sequence 65,274
JAKSNF010000015.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_15, whole genome shotgun sequence 53,271
JAKSNF010000016.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_16, whole genome shotgun sequence 51,732
JAKSNF010000017.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_17, whole genome shotgun sequence 47,601
JAKSNF010000018.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_18, whole genome shotgun sequence 43,048
JAKSNF010000019.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_19, whole genome shotgun sequence 42,705
JAKSNF010000020.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_20, whole genome shotgun sequence 39,636
JAKSNF010000021.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_21, whole genome shotgun sequence 38,737
JAKSNF010000022.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_22, whole genome shotgun sequence 37,288
JAKSNF010000023.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_23, whole genome shotgun sequence 35,151
JAKSNF010000024.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_24, whole genome shotgun sequence 33,134
JAKSNF010000025.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_25, whole genome shotgun sequence 30,523
JAKSNF010000026.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_26, whole genome shotgun sequence 25,160
JAKSNF010000027.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_27, whole genome shotgun sequence 22,026
JAKSNF010000028.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_28, whole genome shotgun sequence 17,305
JAKSNF010000029.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_29, whole genome shotgun sequence 16,542
JAKSNF010000030.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_30, whole genome shotgun sequence 16,305
JAKSNF010000031.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_31, whole genome shotgun sequence 14,912
JAKSNF010000032.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_32, whole genome shotgun sequence 14,704
JAKSNF010000033.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_33, whole genome shotgun sequence 13,708
JAKSNF010000034.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_34, whole genome shotgun sequence 12,108
JAKSNF010000035.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_35, whole genome shotgun sequence 11,496
JAKSNF010000036.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_36, whole genome shotgun sequence 11,017
JAKSNF010000037.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_37, whole genome shotgun sequence 10,820
JAKSNF010000038.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_38, whole genome shotgun sequence 8,030
JAKSNF010000039.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_39, whole genome shotgun sequence 7,631
JAKSNF010000040.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_40, whole genome shotgun sequence 7,569
JAKSNF010000041.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_41, whole genome shotgun sequence 7,112
JAKSNF010000042.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_42, whole genome shotgun sequence 6,784
JAKSNF010000043.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_43, whole genome shotgun sequence 6,229
JAKSNF010000044.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_44, whole genome shotgun sequence 5,383
JAKSNF010000045.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_45, whole genome shotgun sequence 5,131
JAKSNF010000046.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_46, whole genome shotgun sequence 4,825
JAKSNF010000047.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_47, whole genome shotgun sequence 4,289
JAKSNF010000048.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_48, whole genome shotgun sequence 3,953
JAKSNF010000049.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_49, whole genome shotgun sequence 3,617
JAKSNF010000050.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_50, whole genome shotgun sequence 3,217
JAKSNF010000051.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_51, whole genome shotgun sequence 2,668
JAKSNF010000052.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_52, whole genome shotgun sequence 2,377
JAKSNF010000053.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_53, whole genome shotgun sequence 2,157
JAKSNF010000054.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_54, whole genome shotgun sequence 2,153
JAKSNF010000055.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_55, whole genome shotgun sequence 1,395
JAKSNF010000056.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_56, whole genome shotgun sequence 1,206
JAKSNF010000057.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_57, whole genome shotgun sequence 1,170
JAKSNF010000058.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_58, whole genome shotgun sequence 1,158
JAKSNF010000059.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_59, whole genome shotgun sequence 1,099
JAKSNF010000060.1 MAG: Paludibacteraceae bacterium isolate Horse_feces144 MAG144_60, whole genome shotgun sequence 1,018

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory