fast.genomicscompare 6,575 genera of bacteria & archaea

 

HTCC2207 sp025153755 H921

Genome identifier: GCA_025153755.1

NCBI assembly name: ASM2515375v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Porticoccaceae, HTCC2207, HTCC2207 sp025153755

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Porticoccaceae

Scaffolds: 13

Genes: 2,381 Protein-coding: 2,328 RNAs: 46 pseudogenes: 7

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAOALD010000001.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold1, whole genome shotgun sequence 1,117,431
JAOALD010000002.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold2, whole genome shotgun sequence 614,361
JAOALD010000003.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold3, whole genome shotgun sequence 519,747
JAOALD010000004.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold4, whole genome shotgun sequence 147,272
JAOALD010000005.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold5, whole genome shotgun sequence 142,993
JAOALD010000006.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold6, whole genome shotgun sequence 19,579
JAOALD010000007.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold7, whole genome shotgun sequence 5,648
JAOALD010000008.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold8, whole genome shotgun sequence 1,783
JAOALD010000009.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold9, whole genome shotgun sequence 1,636
JAOALD010000010.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold10, whole genome shotgun sequence 1,229
JAOALD010000011.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold11, whole genome shotgun sequence 944
JAOALD010000012.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold12, whole genome shotgun sequence 848
JAOALD010000013.1 SAR92 clade bacterium H921 SAR92-1-2_scaffold13, whole genome shotgun sequence 664

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory