fast.genomicscompare 6,575 genera of bacteria & archaea

 

CAIRNS01 sp903880015 LacPavin_0818_WC45_MAG_49_18

Genome identifier: GCA_026388035.1

NCBI assembly name: ASM2638803v1

GTDB taxonomy: Bacteria, Elusimicrobiota, Endomicrobiia, Endomicrobiales, CAIRNS01, CAIRNS01, CAIRNS01 sp903880015

NCBI taxonomy: Bacteria, Elusimicrobiota

Scaffolds: 10

Genes: 1,674 Protein-coding: 1,609 RNAs: 56 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAPLKM010000001.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_1178960, whole genome shotgun sequence 69,515
JAPLKM010000002.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_607636, whole genome shotgun sequence 186,804
JAPLKM010000003.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_222537, whole genome shotgun sequence 566,710
JAPLKM010000004.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_276302, whole genome shotgun sequence 4,286
JAPLKM010000005.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_35688, whole genome shotgun sequence 16,884
JAPLKM010000006.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_684848, whole genome shotgun sequence 337,869
JAPLKM010000007.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_291282, whole genome shotgun sequence 402,991
JAPLKM010000008.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_113903, whole genome shotgun sequence 101,304
JAPLKM010000009.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_93670, whole genome shotgun sequence 72,621
JAPLKM010000010.1 MAG: Elusimicrobia bacterium isolate LacPavin_0818_WC45_MAG_49_18 LacPavin_0818_WC45_scaffold_881931, whole genome shotgun sequence 170,715

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory