fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAPLKG01 sp026388185 LacPavin_0920_SED4_MAG_56_28

Genome identifier: GCA_026388185.1

NCBI assembly name: ASM2638818v1

GTDB taxonomy: Bacteria, Eisenbacteria, RBG-16-71-46, JAFGJU01, JAFGJU01, JAPLKG01, JAPLKG01 sp026388185

NCBI taxonomy: Bacteria, Candidatus Eisenbacteria

Scaffolds: 20

Genes: 2,220 Protein-coding: 2,149 RNAs: 54 pseudogenes: 17

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAPLKG010000001.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_504385, whole genome shotgun sequence 14,068
JAPLKG010000002.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_2957678, whole genome shotgun sequence 166,029
JAPLKG010000003.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_3196953, whole genome shotgun sequence 165,605
JAPLKG010000004.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_1707217, whole genome shotgun sequence 70,322
JAPLKG010000005.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_12873, whole genome shotgun sequence 136,022
JAPLKG010000006.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_2524627, whole genome shotgun sequence 67,624
JAPLKG010000007.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_2783055, whole genome shotgun sequence 10,515
JAPLKG010000008.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_166122, whole genome shotgun sequence 534,862
JAPLKG010000009.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_1932962, whole genome shotgun sequence 20,463
JAPLKG010000010.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_1291190, whole genome shotgun sequence 131,164
JAPLKG010000011.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_2787331, whole genome shotgun sequence 436,827
JAPLKG010000012.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_263961, whole genome shotgun sequence 4,689
JAPLKG010000013.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_537690, whole genome shotgun sequence 7,326
JAPLKG010000014.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_1437721, whole genome shotgun sequence 341,536
JAPLKG010000015.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_1186600, whole genome shotgun sequence 11,419
JAPLKG010000016.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_311435, whole genome shotgun sequence 15,364
JAPLKG010000017.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_594449, whole genome shotgun sequence 286,080
JAPLKG010000018.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_2901201, whole genome shotgun sequence 66,544
JAPLKG010000019.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_2431611, whole genome shotgun sequence 18,726
JAPLKG010000020.1 MAG: Candidatus Eisenbacteria bacterium isolate LacPavin_0920_SED4_MAG_56_28 LacPavin_0920_SED4_scaffold_399334, whole genome shotgun sequence 113,977

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory