fast.genomicscompare 6,575 genera of bacteria & archaea

 

Fen-1298 sp026390575 LacPavin_0419_WC90_MAG_43_80

Genome identifier: GCA_026390575.1

NCBI assembly name: ASM2639057v1

GTDB taxonomy: Bacteria, Bacteroidota, UBA10030, UBA10030, UBA10030, Fen-1298, Fen-1298 sp026390575

NCBI taxonomy: Bacteria, Ignavibacteriota, Ignavibacteria, Ignavibacteriales

Scaffolds: 16

Genes: 3,210 Protein-coding: 3,141 RNAs: 55 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAPLFR010000001.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_238742, whole genome shotgun sequence 466,836
JAPLFR010000002.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_726686, whole genome shotgun sequence 188,109
JAPLFR010000003.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_507275, whole genome shotgun sequence 109,133
JAPLFR010000004.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_737459, whole genome shotgun sequence 40,072
JAPLFR010000005.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_101256, whole genome shotgun sequence 16,580
JAPLFR010000006.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_125485, whole genome shotgun sequence 344,041
JAPLFR010000007.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_346609, whole genome shotgun sequence 302,326
JAPLFR010000008.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_390449, whole genome shotgun sequence 516,125
JAPLFR010000009.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_589976, whole genome shotgun sequence 404,378
JAPLFR010000010.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_1063556, whole genome shotgun sequence 88,431
JAPLFR010000011.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_1165364, whole genome shotgun sequence 91,210
JAPLFR010000012.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_704344, whole genome shotgun sequence 7,638
JAPLFR010000013.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_483686, whole genome shotgun sequence 98,736
JAPLFR010000014.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_544636, whole genome shotgun sequence 10,705
JAPLFR010000015.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_333737, whole genome shotgun sequence 404,278
JAPLFR010000016.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0419_WC90_MAG_43_80 LacPavin_0419_WC90_scaffold_437659, whole genome shotgun sequence 732,357

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory