fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAPLFH01 sp026390815 LacPavin_0920_WC70_MAG_34_41

Genome identifier: GCA_026390815.1

NCBI assembly name: ASM2639081v1

GTDB taxonomy: Bacteria, Bacteroidota, Ignavibacteria, Ignavibacteriales, SURF-24, JAPLFH01, JAPLFH01 sp026390815

NCBI taxonomy: Bacteria, Ignavibacteriota, Ignavibacteria, Ignavibacteriales

Scaffolds: 59

Genes: 3,695 Protein-coding: 3,634 RNAs: 53 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAPLFH010000001.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1738350, whole genome shotgun sequence 1,588
JAPLFH010000002.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1889876, whole genome shotgun sequence 17,228
JAPLFH010000003.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_800765, whole genome shotgun sequence 107,772
JAPLFH010000004.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_252329, whole genome shotgun sequence 9,140
JAPLFH010000005.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_424063, whole genome shotgun sequence 138,343
JAPLFH010000006.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_593194, whole genome shotgun sequence 299,266
JAPLFH010000007.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_631810, whole genome shotgun sequence 261,812
JAPLFH010000008.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1474068, whole genome shotgun sequence 38,749
JAPLFH010000009.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1767063, whole genome shotgun sequence 159,807
JAPLFH010000010.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_318177, whole genome shotgun sequence 58,523
JAPLFH010000011.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_832705, whole genome shotgun sequence 99,034
JAPLFH010000012.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1010937, whole genome shotgun sequence 215,688
JAPLFH010000013.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_283229, whole genome shotgun sequence 60,177
JAPLFH010000014.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1216693, whole genome shotgun sequence 38,351
JAPLFH010000015.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_404631, whole genome shotgun sequence 106,086
JAPLFH010000016.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_813233, whole genome shotgun sequence 124,508
JAPLFH010000017.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1735014, whole genome shotgun sequence 8,557
JAPLFH010000018.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_999987, whole genome shotgun sequence 72,571
JAPLFH010000019.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_371167, whole genome shotgun sequence 4,002
JAPLFH010000020.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_237539, whole genome shotgun sequence 3,661
JAPLFH010000021.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_97338, whole genome shotgun sequence 7,053
JAPLFH010000022.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_781289, whole genome shotgun sequence 2,052
JAPLFH010000023.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_782293, whole genome shotgun sequence 7,220
JAPLFH010000024.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_191994, whole genome shotgun sequence 224,765
JAPLFH010000025.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_774911, whole genome shotgun sequence 66,834
JAPLFH010000026.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1541989, whole genome shotgun sequence 16,257
JAPLFH010000027.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_809981, whole genome shotgun sequence 29,054
JAPLFH010000028.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1524533, whole genome shotgun sequence 9,971
JAPLFH010000029.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_909264, whole genome shotgun sequence 32,547
JAPLFH010000030.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_540968, whole genome shotgun sequence 18,575
JAPLFH010000031.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_721911, whole genome shotgun sequence 61,154
JAPLFH010000032.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_799157, whole genome shotgun sequence 120,903
JAPLFH010000033.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1181770, whole genome shotgun sequence 304,459
JAPLFH010000034.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_203219, whole genome shotgun sequence 101,571
JAPLFH010000035.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_378959, whole genome shotgun sequence 11,492
JAPLFH010000036.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1567366, whole genome shotgun sequence 9,775
JAPLFH010000037.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1588609, whole genome shotgun sequence 28,552
JAPLFH010000038.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_365261, whole genome shotgun sequence 17,742
JAPLFH010000039.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_84758, whole genome shotgun sequence 86,115
JAPLFH010000040.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_138385, whole genome shotgun sequence 126,449
JAPLFH010000041.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_671184, whole genome shotgun sequence 164,015
JAPLFH010000042.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_973990, whole genome shotgun sequence 2,415
JAPLFH010000043.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1307535, whole genome shotgun sequence 86,717
JAPLFH010000044.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1844340, whole genome shotgun sequence 10,558
JAPLFH010000045.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_711745, whole genome shotgun sequence 28,206
JAPLFH010000046.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_116831, whole genome shotgun sequence 197,085
JAPLFH010000047.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_757168, whole genome shotgun sequence 86,667
JAPLFH010000048.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1292153, whole genome shotgun sequence 45,715
JAPLFH010000049.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1785518, whole genome shotgun sequence 86,335
JAPLFH010000050.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1842946, whole genome shotgun sequence 11,179
JAPLFH010000051.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_487327, whole genome shotgun sequence 18,124
JAPLFH010000052.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_617025, whole genome shotgun sequence 25,444
JAPLFH010000053.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1435033, whole genome shotgun sequence 50,019
JAPLFH010000054.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_1303589, whole genome shotgun sequence 145,343
JAPLFH010000055.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_794504, whole genome shotgun sequence 122,227
JAPLFH010000056.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_162948, whole genome shotgun sequence 132,825
JAPLFH010000057.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_231433, whole genome shotgun sequence 89,923
JAPLFH010000058.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_447993, whole genome shotgun sequence 34,145
JAPLFH010000059.1 MAG: Ignavibacteriales bacterium isolate LacPavin_0920_WC70_MAG_34_41 LacPavin_0920_WC70_scaffold_697953, whole genome shotgun sequence 76,145

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory