fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAPLXB01 sp026396285 LacPavin_0920_SED4_MAG_58_19

Genome identifier: GCA_026396285.1

NCBI assembly name: ASM2639628v1

GTDB taxonomy: Archaea, Micrarchaeota, Micrarchaeia, Norongarragalinales, JAPLXB01, JAPLXB01, JAPLXB01 sp026396285

NCBI taxonomy: Archaea, Candidatus Micrarchaeota

Scaffolds: 56

Genes: 1,175 Protein-coding: 1,114 RNAs: 43 pseudogenes: 18

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAPLXB010000001.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1321846, whole genome shotgun sequence 2,705
JAPLXB010000002.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2293333, whole genome shotgun sequence 10,465
JAPLXB010000003.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1109446, whole genome shotgun sequence 13,574
JAPLXB010000004.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_614460, whole genome shotgun sequence 11,413
JAPLXB010000005.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2546649, whole genome shotgun sequence 9,211
JAPLXB010000006.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_891070, whole genome shotgun sequence 13,317
JAPLXB010000007.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2020927, whole genome shotgun sequence 3,873
JAPLXB010000008.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_3256325, whole genome shotgun sequence 15,371
JAPLXB010000009.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_466708, whole genome shotgun sequence 16,063
JAPLXB010000010.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_419863, whole genome shotgun sequence 8,699
JAPLXB010000011.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_157740, whole genome shotgun sequence 4,985
JAPLXB010000012.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2240967, whole genome shotgun sequence 22,931
JAPLXB010000013.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_3064898, whole genome shotgun sequence 3,039
JAPLXB010000014.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1429212, whole genome shotgun sequence 2,593
JAPLXB010000015.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2191032, whole genome shotgun sequence 5,784
JAPLXB010000016.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_541373, whole genome shotgun sequence 1,689
JAPLXB010000017.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1768530, whole genome shotgun sequence 4,308
JAPLXB010000018.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_973381, whole genome shotgun sequence 5,902
JAPLXB010000019.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2761049, whole genome shotgun sequence 14,857
JAPLXB010000020.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1537215, whole genome shotgun sequence 24,110
JAPLXB010000021.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_763758, whole genome shotgun sequence 49,934
JAPLXB010000022.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_400468, whole genome shotgun sequence 79,415
JAPLXB010000023.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_711004, whole genome shotgun sequence 44,655
JAPLXB010000024.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_71155, whole genome shotgun sequence 53,859
JAPLXB010000025.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_970091, whole genome shotgun sequence 30,965
JAPLXB010000026.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1438716, whole genome shotgun sequence 22,742
JAPLXB010000027.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2546189, whole genome shotgun sequence 57,179
JAPLXB010000028.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_3042624, whole genome shotgun sequence 9,652
JAPLXB010000029.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_908442, whole genome shotgun sequence 5,115
JAPLXB010000030.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_104756, whole genome shotgun sequence 12,276
JAPLXB010000031.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2328842, whole genome shotgun sequence 32,047
JAPLXB010000032.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1232376, whole genome shotgun sequence 24,550
JAPLXB010000033.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1615563, whole genome shotgun sequence 42,200
JAPLXB010000034.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1827034, whole genome shotgun sequence 30,047
JAPLXB010000035.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_379018, whole genome shotgun sequence 3,293
JAPLXB010000036.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_300443, whole genome shotgun sequence 3,545
JAPLXB010000037.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_653137, whole genome shotgun sequence 2,564
JAPLXB010000038.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1374229, whole genome shotgun sequence 4,716
JAPLXB010000039.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_45317, whole genome shotgun sequence 5,421
JAPLXB010000040.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2501728, whole genome shotgun sequence 4,318
JAPLXB010000041.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_343903, whole genome shotgun sequence 2,143
JAPLXB010000042.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1271379, whole genome shotgun sequence 29,097
JAPLXB010000043.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_2281875, whole genome shotgun sequence 36,320
JAPLXB010000044.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_505623, whole genome shotgun sequence 10,167
JAPLXB010000045.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1032252, whole genome shotgun sequence 64,874
JAPLXB010000046.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_769069, whole genome shotgun sequence 21,934
JAPLXB010000047.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_217752, whole genome shotgun sequence 5,006
JAPLXB010000048.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1081304, whole genome shotgun sequence 42,813
JAPLXB010000049.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_893890, whole genome shotgun sequence 14,640
JAPLXB010000050.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_863103, whole genome shotgun sequence 12,090
JAPLXB010000051.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_851915, whole genome shotgun sequence 10,667
JAPLXB010000052.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_886591, whole genome shotgun sequence 2,454
JAPLXB010000053.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1471065, whole genome shotgun sequence 9,294
JAPLXB010000054.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_574557, whole genome shotgun sequence 10,879
JAPLXB010000055.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_1012845, whole genome shotgun sequence 21,874
JAPLXB010000056.1 MAG: Candidatus Micrarchaeota archaeon isolate LacPavin_0920_SED4_MAG_58_19 LacPavin_0920_SED4_scaffold_794724, whole genome shotgun sequence 18,689

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory