fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA1275 sp002457365 casp40-mb.17

Genome identifier: GCA_027618275.1

NCBI assembly name: ASM2761827v1

GTDB taxonomy: Bacteria, Bacteroidota, Rhodothermia, Balneolales, Balneolaceae, UBA1275, UBA1275 sp002457365

NCBI taxonomy: Bacteria, Bacteroidota

Scaffolds: 62

Genes: 1,887 Protein-coding: 1,840 RNAs: 39 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQCFU010000001.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_90_length_169875_cov_0.230875, whole genome shotgun sequence 169,875
JAQCFU010000002.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_122_length_151598_cov_0.243348, whole genome shotgun sequence 151,598
JAQCFU010000003.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_132_length_147529_cov_0.246924, whole genome shotgun sequence 147,529
JAQCFU010000004.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_165_length_136762_cov_0.214447, whole genome shotgun sequence 136,762
JAQCFU010000005.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_379_length_99745_cov_0.283754, whole genome shotgun sequence 99,745
JAQCFU010000006.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_420_length_94999_cov_0.291791, whole genome shotgun sequence 94,999
JAQCFU010000007.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_453_length_91234_cov_0.265397, whole genome shotgun sequence 91,234
JAQCFU010000008.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_590_length_80335_cov_0.229510, whole genome shotgun sequence 80,335
JAQCFU010000009.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_967_length_63163_cov_0.253806, whole genome shotgun sequence 63,163
JAQCFU010000010.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1121_length_59436_cov_0.229755, whole genome shotgun sequence 59,436
JAQCFU010000011.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1156_length_58415_cov_0.224947, whole genome shotgun sequence 58,415
JAQCFU010000012.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1218_length_56970_cov_0.231383, whole genome shotgun sequence 56,970
JAQCFU010000013.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1239_length_56535_cov_0.231643, whole genome shotgun sequence 56,535
JAQCFU010000014.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1460_length_52552_cov_0.256954, whole genome shotgun sequence 52,552
JAQCFU010000015.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1528_length_51274_cov_0.282130, whole genome shotgun sequence 51,274
JAQCFU010000016.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1706_length_48115_cov_0.216574, whole genome shotgun sequence 48,115
JAQCFU010000017.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1800_length_46896_cov_0.290040, whole genome shotgun sequence 46,896
JAQCFU010000018.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_1997_length_44140_cov_0.239118, whole genome shotgun sequence 44,140
JAQCFU010000019.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_2187_length_41581_cov_0.234053, whole genome shotgun sequence 41,581
JAQCFU010000020.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_2292_length_40325_cov_0.276637, whole genome shotgun sequence 40,325
JAQCFU010000021.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_2401_length_39013_cov_0.219356, whole genome shotgun sequence 39,013
JAQCFU010000022.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_2409_length_38919_cov_0.196548, whole genome shotgun sequence 38,919
JAQCFU010000023.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_3405_length_31119_cov_0.225435, whole genome shotgun sequence 31,119
JAQCFU010000024.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_3510_length_30430_cov_0.243843, whole genome shotgun sequence 30,430
JAQCFU010000025.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_3812_length_28783_cov_0.222040, whole genome shotgun sequence 28,783
JAQCFU010000026.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_3920_length_28317_cov_0.187292, whole genome shotgun sequence 28,317
JAQCFU010000027.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_4187_length_27013_cov_0.277439, whole genome shotgun sequence 27,013
JAQCFU010000028.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_4199_length_26975_cov_0.243117, whole genome shotgun sequence 26,975
JAQCFU010000029.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_4401_length_26189_cov_0.227175, whole genome shotgun sequence 26,189
JAQCFU010000030.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_5068_length_23705_cov_0.219986, whole genome shotgun sequence 23,705
JAQCFU010000031.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_6143_length_20749_cov_0.245036, whole genome shotgun sequence 20,749
JAQCFU010000032.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_6275_length_20409_cov_0.287691, whole genome shotgun sequence 20,409
JAQCFU010000033.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_6301_length_20351_cov_0.226052, whole genome shotgun sequence 20,351
JAQCFU010000034.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_7051_length_18751_cov_0.246515, whole genome shotgun sequence 18,751
JAQCFU010000035.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_8438_length_16345_cov_0.207743, whole genome shotgun sequence 16,345
JAQCFU010000036.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_8680_length_16024_cov_0.242512, whole genome shotgun sequence 16,024
JAQCFU010000037.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_8794_length_15859_cov_0.206155, whole genome shotgun sequence 15,859
JAQCFU010000038.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_10897_length_13368_cov_0.077097, whole genome shotgun sequence 13,368
JAQCFU010000039.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_11207_length_13085_cov_0.206838, whole genome shotgun sequence 13,085
JAQCFU010000040.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_11559_length_12787_cov_0.216031, whole genome shotgun sequence 12,787
JAQCFU010000041.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_11973_length_12442_cov_0.173054, whole genome shotgun sequence 12,442
JAQCFU010000042.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_12163_length_12279_cov_0.220279, whole genome shotgun sequence 12,279
JAQCFU010000043.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_13172_length_11539_cov_0.267395, whole genome shotgun sequence 11,539
JAQCFU010000044.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_14943_length_10484_cov_0.254405, whole genome shotgun sequence 10,484
JAQCFU010000045.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_14965_length_10468_cov_0.191725, whole genome shotgun sequence 10,468
JAQCFU010000046.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_15055_length_10416_cov_0.233692, whole genome shotgun sequence 10,416
JAQCFU010000047.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_24667_length_7085_cov_0.265960, whole genome shotgun sequence 7,085
JAQCFU010000048.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_24681_length_7082_cov_0.273235, whole genome shotgun sequence 7,082
JAQCFU010000049.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_24708_length_7077_cov_0.207796, whole genome shotgun sequence 7,077
JAQCFU010000050.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_30858_length_5938_cov_0.221271, whole genome shotgun sequence 5,938
JAQCFU010000051.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_32043_length_5762_cov_0.220554, whole genome shotgun sequence 5,762
JAQCFU010000052.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_37224_length_5128_cov_0.189302, whole genome shotgun sequence 5,128
JAQCFU010000053.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_37288_length_5120_cov_0.230631, whole genome shotgun sequence 5,120
JAQCFU010000054.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_39395_length_4901_cov_0.202624, whole genome shotgun sequence 4,901
JAQCFU010000055.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_39934_length_4846_cov_0.179903, whole genome shotgun sequence 4,846
JAQCFU010000056.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_42420_length_4623_cov_0.174182, whole genome shotgun sequence 4,623
JAQCFU010000057.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_45314_length_4383_cov_0.302288, whole genome shotgun sequence 4,383
JAQCFU010000058.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_46632_length_4280_cov_0.262617, whole genome shotgun sequence 4,280
JAQCFU010000059.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_55151_length_3742_cov_0.091134, whole genome shotgun sequence 3,742
JAQCFU010000060.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_56883_length_3648_cov_0.235841, whole genome shotgun sequence 3,648
JAQCFU010000061.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_83246_length_2690_cov_0.180625, whole genome shotgun sequence 2,690
JAQCFU010000062.1 MAG: Bacteroidetes bacterium isolate casp40-mb.17 NODE_88263_length_2563_cov_0.141234, whole genome shotgun sequence 2,563

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory