fast.genomicscompare 6,575 genera of bacteria & archaea

 

1-14-0-20-39-49 sp027620075 casp40-mb.135

Genome identifier: GCA_027620075.1

NCBI assembly name: ASM2762007v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rickettsiales, UBA6187, 1-14-0-20-39-49, 1-14-0-20-39-49 sp027620075

NCBI taxonomy: Bacteria, Pseudomonadota

Scaffolds: 15

Genes: 2,348 Protein-coding: 2,279 RNAs: 42 pseudogenes: 27

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQCEY010000001.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_1_length_621614_cov_1.423575, whole genome shotgun sequence 621,614
JAQCEY010000002.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_5_length_498361_cov_1.443076, whole genome shotgun sequence 498,361
JAQCEY010000003.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_21_length_283158_cov_1.477936, whole genome shotgun sequence 283,158
JAQCEY010000004.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_139_length_146716_cov_1.442807, whole genome shotgun sequence 146,716
JAQCEY010000005.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_143_length_144288_cov_1.446366, whole genome shotgun sequence 144,288
JAQCEY010000006.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_179_length_133863_cov_1.441778, whole genome shotgun sequence 133,863
JAQCEY010000007.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_296_length_109867_cov_0.691258, whole genome shotgun sequence 109,867
JAQCEY010000008.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_300_length_109396_cov_1.368519, whole genome shotgun sequence 109,396
JAQCEY010000009.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_683_length_75217_cov_1.474467, whole genome shotgun sequence 75,217
JAQCEY010000010.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_1387_length_53610_cov_1.403338, whole genome shotgun sequence 53,610
JAQCEY010000011.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_1767_length_47293_cov_1.362652, whole genome shotgun sequence 47,293
JAQCEY010000012.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_1863_length_45895_cov_1.294436, whole genome shotgun sequence 45,895
JAQCEY010000013.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_2114_length_42582_cov_1.373114, whole genome shotgun sequence 42,582
JAQCEY010000014.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_5771_length_21673_cov_1.463753, whole genome shotgun sequence 21,673
JAQCEY010000015.1 MAG: Proteobacteria bacterium isolate casp40-mb.135 NODE_7104_length_18648_cov_1.508383, whole genome shotgun sequence 18,648

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory