fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAATFR01 sp028283765 Chal_Metagen_Bin4

Genome identifier: GCA_028283765.1

NCBI assembly name: ASM2828376v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Parvibaculales, Parvibaculaceae, JAATFR01, JAATFR01 sp028283765

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Parvibaculaceae

Scaffolds: 9

Genes: 3,022 Protein-coding: 2,912 RNAs: 58 pseudogenes: 52

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAPWJY010000001.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 7211, whole genome shotgun sequence 134,137
JAPWJY010000002.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 7379, whole genome shotgun sequence 252,502
JAPWJY010000003.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 7796, whole genome shotgun sequence 286,201
JAPWJY010000004.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 7994, whole genome shotgun sequence 68,795
JAPWJY010000005.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 8203, whole genome shotgun sequence 6,401
JAPWJY010000006.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 12822, whole genome shotgun sequence 10,584
JAPWJY010000007.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 12989, whole genome shotgun sequence 138,068
JAPWJY010000008.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 13656, whole genome shotgun sequence 2,081,955
JAPWJY010000009.1 MAG: Parvibaculaceae bacterium isolate Chal_Metagen_Bin4 14656, whole genome shotgun sequence 257,436

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory