fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA12481 sp012523435 STCSWMC_133

Genome identifier: GCA_028686135.1

NCBI assembly name: ASM2868613v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, UBA12481, UBA12481, UBA12481 sp012523435

NCBI taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales

Scaffolds: 51

Genes: 2,243 Protein-coding: 2,188 RNAs: 47 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQUCP010000001.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_15_length_351026_cov_30.049784_ST_CSWMC, whole genome shotgun sequence 351,026
JAQUCP010000002.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_69_length_187071_cov_28.732348_ST_CSWMC, whole genome shotgun sequence 187,071
JAQUCP010000003.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_77_length_174666_cov_31.556323_ST_CSWMC, whole genome shotgun sequence 174,666
JAQUCP010000004.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_83_length_167890_cov_28.175390_ST_CSWMC, whole genome shotgun sequence 167,890
JAQUCP010000005.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_101_length_156102_cov_29.441737_ST_CSWMC, whole genome shotgun sequence 156,102
JAQUCP010000006.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_159_length_130559_cov_28.419452_ST_CSWMC, whole genome shotgun sequence 130,559
JAQUCP010000007.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_188_length_120315_cov_31.174227_ST_CSWMC, whole genome shotgun sequence 120,315
JAQUCP010000008.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_284_length_100611_cov_29.636917_ST_CSWMC, whole genome shotgun sequence 100,611
JAQUCP010000009.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_294_length_99172_cov_30.459428_ST_CSWMC, whole genome shotgun sequence 99,172
JAQUCP010000010.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_335_length_93228_cov_27.475333_ST_CSWMC, whole genome shotgun sequence 93,228
JAQUCP010000011.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_347_length_91364_cov_28.766389_ST_CSWMC, whole genome shotgun sequence 91,364
JAQUCP010000012.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_349_length_91208_cov_29.169278_ST_CSWMC, whole genome shotgun sequence 91,208
JAQUCP010000013.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_509_length_77776_cov_30.103916_ST_CSWMC, whole genome shotgun sequence 77,776
JAQUCP010000014.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_627_length_70528_cov_28.633755_ST_CSWMC, whole genome shotgun sequence 70,528
JAQUCP010000015.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_1293_length_49929_cov_27.416027_ST_CSWMC, whole genome shotgun sequence 49,929
JAQUCP010000016.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_1628_length_44619_cov_29.537355_ST_CSWMC, whole genome shotgun sequence 44,619
JAQUCP010000017.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_1759_length_42962_cov_29.130011_ST_CSWMC, whole genome shotgun sequence 42,962
JAQUCP010000018.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_1799_length_42433_cov_30.661916_ST_CSWMC, whole genome shotgun sequence 42,433
JAQUCP010000019.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_2078_length_39158_cov_30.087700_ST_CSWMC, whole genome shotgun sequence 39,158
JAQUCP010000020.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_2123_length_38701_cov_28.850754_ST_CSWMC, whole genome shotgun sequence 38,701
JAQUCP010000021.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_2173_length_38128_cov_28.507250_ST_CSWMC, whole genome shotgun sequence 38,128
JAQUCP010000022.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_2183_length_38096_cov_28.122284_ST_CSWMC, whole genome shotgun sequence 38,096
JAQUCP010000023.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_2797_length_33266_cov_28.582244_ST_CSWMC, whole genome shotgun sequence 33,266
JAQUCP010000024.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_3069_length_31628_cov_28.868163_ST_CSWMC, whole genome shotgun sequence 31,628
JAQUCP010000025.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_3642_length_28568_cov_28.796737_ST_CSWMC, whole genome shotgun sequence 28,568
JAQUCP010000026.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_3778_length_28004_cov_27.400904_ST_CSWMC, whole genome shotgun sequence 28,004
JAQUCP010000027.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_4407_length_25782_cov_28.436640_ST_CSWMC, whole genome shotgun sequence 25,782
JAQUCP010000028.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_4872_length_24239_cov_26.706826_ST_CSWMC, whole genome shotgun sequence 24,239
JAQUCP010000029.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_5421_length_22692_cov_30.502194_ST_CSWMC, whole genome shotgun sequence 22,692
JAQUCP010000030.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_6924_length_19625_cov_29.206944_ST_CSWMC, whole genome shotgun sequence 19,625
JAQUCP010000031.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_7050_length_19404_cov_27.560513_ST_CSWMC, whole genome shotgun sequence 19,404
JAQUCP010000032.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_7436_length_18822_cov_29.895159_ST_CSWMC, whole genome shotgun sequence 18,822
JAQUCP010000033.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_7591_length_18601_cov_27.110047_ST_CSWMC, whole genome shotgun sequence 18,601
JAQUCP010000034.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_7849_length_18218_cov_26.864297_ST_CSWMC, whole genome shotgun sequence 18,218
JAQUCP010000035.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_7915_length_18112_cov_29.073061_ST_CSWMC, whole genome shotgun sequence 18,112
JAQUCP010000036.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_8265_length_17658_cov_27.900975_ST_CSWMC, whole genome shotgun sequence 17,658
JAQUCP010000037.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_13756_length_12886_cov_28.280665_ST_CSWMC, whole genome shotgun sequence 12,886
JAQUCP010000038.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_14294_length_12571_cov_28.538010_ST_CSWMC, whole genome shotgun sequence 12,571
JAQUCP010000039.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_16172_length_11650_cov_28.783563_ST_CSWMC, whole genome shotgun sequence 11,650
JAQUCP010000040.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_21852_length_9640_cov_28.274782_ST_CSWMC, whole genome shotgun sequence 9,640
JAQUCP010000041.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_26792_length_8471_cov_28.572028_ST_CSWMC, whole genome shotgun sequence 8,471
JAQUCP010000042.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_27083_length_8412_cov_27.812553_ST_CSWMC, whole genome shotgun sequence 8,412
JAQUCP010000043.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_33544_length_7319_cov_28.571885_ST_CSWMC, whole genome shotgun sequence 7,319
JAQUCP010000044.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_44059_length_6169_cov_27.925025_ST_CSWMC, whole genome shotgun sequence 6,169
JAQUCP010000045.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_66092_length_4787_cov_27.109227_ST_CSWMC, whole genome shotgun sequence 4,787
JAQUCP010000046.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_92722_length_3896_cov_33.505704_ST_CSWMC, whole genome shotgun sequence 3,896
JAQUCP010000047.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_95105_length_3835_cov_18.280205_ST_CSWMC, whole genome shotgun sequence 3,835
JAQUCP010000048.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_109312_length_3526_cov_29.012945_ST_CSWMC, whole genome shotgun sequence 3,526
JAQUCP010000049.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_111295_length_3489_cov_21.387269_ST_CSWMC, whole genome shotgun sequence 3,489
JAQUCP010000050.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_124801_length_3256_cov_14.558965_ST_CSWMC, whole genome shotgun sequence 3,256
JAQUCP010000051.1 MAG: Bacteroidales bacterium isolate STCSWMC_133 NODE_127707_length_3211_cov_24.497406_ST_CSWMC, whole genome shotgun sequence 3,211

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory