fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAQVGI01 sp028696805 STE_179

Genome identifier: GCA_028696805.1

NCBI assembly name: ASM2869680v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, RF32, UBA3637, JAQVGI01, JAQVGI01 sp028696805

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 44

Genes: 1,036 Protein-coding: 970 RNAs: 49 pseudogenes: 17

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQVGI010000001.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1198_length_49107_cov_5.060841_Sandtown_E, whole genome shotgun sequence 49,107
JAQVGI010000002.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1365_length_46078_cov_5.542164_Sandtown_E, whole genome shotgun sequence 46,078
JAQVGI010000003.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1380_length_45782_cov_4.751769_Sandtown_E, whole genome shotgun sequence 45,782
JAQVGI010000004.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1475_length_44251_cov_6.141533_Sandtown_E, whole genome shotgun sequence 44,251
JAQVGI010000005.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1528_length_43525_cov_4.913890_Sandtown_E, whole genome shotgun sequence 43,525
JAQVGI010000006.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1552_length_43116_cov_4.876503_Sandtown_E, whole genome shotgun sequence 43,116
JAQVGI010000007.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1651_length_41835_cov_5.020644_Sandtown_E, whole genome shotgun sequence 41,835
JAQVGI010000008.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1754_length_40482_cov_4.876397_Sandtown_E, whole genome shotgun sequence 40,482
JAQVGI010000009.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1755_length_40434_cov_4.746049_Sandtown_E, whole genome shotgun sequence 40,434
JAQVGI010000010.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1790_length_40050_cov_4.355058_Sandtown_E, whole genome shotgun sequence 40,050
JAQVGI010000011.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_1951_length_38310_cov_4.624074_Sandtown_E, whole genome shotgun sequence 38,310
JAQVGI010000012.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_2479_length_33751_cov_5.001309_Sandtown_E, whole genome shotgun sequence 33,751
JAQVGI010000013.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_2883_length_31188_cov_5.215511_Sandtown_E, whole genome shotgun sequence 31,188
JAQVGI010000014.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_3417_length_28287_cov_4.688956_Sandtown_E, whole genome shotgun sequence 28,287
JAQVGI010000015.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_3538_length_27721_cov_4.945278_Sandtown_E, whole genome shotgun sequence 27,721
JAQVGI010000016.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_4067_length_25527_cov_4.425906_Sandtown_E, whole genome shotgun sequence 25,527
JAQVGI010000017.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_4446_length_24116_cov_4.656676_Sandtown_E, whole genome shotgun sequence 24,116
JAQVGI010000018.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_4779_length_23008_cov_4.431930_Sandtown_E, whole genome shotgun sequence 23,008
JAQVGI010000019.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_4787_length_22987_cov_4.761199_Sandtown_E, whole genome shotgun sequence 22,987
JAQVGI010000020.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_6133_length_19647_cov_4.840523_Sandtown_E, whole genome shotgun sequence 19,622
JAQVGI010000021.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_6717_length_18572_cov_4.509244_Sandtown_E, whole genome shotgun sequence 18,572
JAQVGI010000022.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_6865_length_18306_cov_4.462787_Sandtown_E, whole genome shotgun sequence 18,306
JAQVGI010000023.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_6950_length_18172_cov_4.687393_Sandtown_E, whole genome shotgun sequence 18,172
JAQVGI010000024.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_7348_length_17498_cov_4.420356_Sandtown_E, whole genome shotgun sequence 17,498
JAQVGI010000025.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_7641_length_17105_cov_4.696961_Sandtown_E, whole genome shotgun sequence 17,105
JAQVGI010000026.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_9350_length_15021_cov_4.665704_Sandtown_E, whole genome shotgun sequence 15,021
JAQVGI010000027.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_11603_length_13052_cov_5.589091_Sandtown_E, whole genome shotgun sequence 13,052
JAQVGI010000028.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_14358_length_11348_cov_4.116656_Sandtown_E, whole genome shotgun sequence 11,348
JAQVGI010000029.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_14536_length_11257_cov_5.564241_Sandtown_E, whole genome shotgun sequence 11,257
JAQVGI010000030.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_14968_length_11043_cov_4.513650_Sandtown_E, whole genome shotgun sequence 11,043
JAQVGI010000031.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_15511_length_10780_cov_5.371351_Sandtown_E, whole genome shotgun sequence 10,780
JAQVGI010000032.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_15661_length_10717_cov_5.997073_Sandtown_E, whole genome shotgun sequence 10,717
JAQVGI010000033.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_16284_length_10451_cov_5.142677_Sandtown_E, whole genome shotgun sequence 10,451
JAQVGI010000034.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_16399_length_10396_cov_3.954036_Sandtown_E, whole genome shotgun sequence 10,396
JAQVGI010000035.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_21198_length_8838_cov_4.369648_Sandtown_E, whole genome shotgun sequence 8,816
JAQVGI010000036.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_21708_length_8704_cov_3.991489_Sandtown_E, whole genome shotgun sequence 8,704
JAQVGI010000037.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_21733_length_8699_cov_4.393607_Sandtown_E, whole genome shotgun sequence 8,699
JAQVGI010000038.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_40452_length_5813_cov_5.435807_Sandtown_E, whole genome shotgun sequence 5,813
JAQVGI010000039.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_45395_length_5404_cov_3.763123_Sandtown_E, whole genome shotgun sequence 5,404
JAQVGI010000040.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_61359_length_4475_cov_4.237121_Sandtown_E, whole genome shotgun sequence 4,475
JAQVGI010000041.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_81419_length_3755_cov_4.312845_Sandtown_E, whole genome shotgun sequence 3,755
JAQVGI010000042.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_85230_length_3651_cov_5.807321_Sandtown_E, whole genome shotgun sequence 3,651
JAQVGI010000043.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_85535_length_3643_cov_4.335040_Sandtown_E, whole genome shotgun sequence 3,643
JAQVGI010000044.1 MAG: Alphaproteobacteria bacterium isolate STE_179 NODE_127210_length_2867_cov_5.619343_Sandtown_E, whole genome shotgun sequence 2,867

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory