fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAQVVF01 sp028699085 STF1_73

Genome identifier: GCA_028699085.1

NCBI assembly name: ASM2869908v1

GTDB taxonomy: Bacteria, Patescibacteria, JABMPQ01, JABMPQ01, JAQVVF01, JAQVVF01, JAQVVF01 sp028699085

NCBI taxonomy: Bacteria

Scaffolds: 29

Genes: 1,213 Protein-coding: 1,147 RNAs: 57 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQVVF010000001.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_49_length_210904_cov_5.972502_Sandtown_F1, whole genome shotgun sequence 210,904
JAQVVF010000002.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_56_length_200518_cov_6.153864_Sandtown_F1, whole genome shotgun sequence 200,518
JAQVVF010000003.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_282_length_103787_cov_5.886475_Sandtown_F1, whole genome shotgun sequence 103,787
JAQVVF010000004.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_342_length_96838_cov_6.101943_Sandtown_F1, whole genome shotgun sequence 96,838
JAQVVF010000005.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_675_length_70387_cov_5.595801_Sandtown_F1, whole genome shotgun sequence 70,387
JAQVVF010000006.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_926_length_59585_cov_6.244004_Sandtown_F1, whole genome shotgun sequence 59,585
JAQVVF010000007.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_933_length_59392_cov_5.910706_Sandtown_F1, whole genome shotgun sequence 59,392
JAQVVF010000008.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_1351_length_48956_cov_5.727846_Sandtown_F1, whole genome shotgun sequence 48,956
JAQVVF010000009.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_1533_length_45939_cov_5.914433_Sandtown_F1, whole genome shotgun sequence 45,939
JAQVVF010000010.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_2421_length_35866_cov_6.048742_Sandtown_F1, whole genome shotgun sequence 35,866
JAQVVF010000011.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_2639_length_34122_cov_6.334990_Sandtown_F1, whole genome shotgun sequence 34,122
JAQVVF010000012.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_3483_length_29235_cov_5.659028_Sandtown_F1, whole genome shotgun sequence 29,235
JAQVVF010000013.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_4562_length_24912_cov_7.118782_Sandtown_F1, whole genome shotgun sequence 24,912
JAQVVF010000014.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_4772_length_24281_cov_6.174795_Sandtown_F1, whole genome shotgun sequence 24,281
JAQVVF010000015.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_5479_length_22425_cov_4.541797_Sandtown_F1, whole genome shotgun sequence 22,425
JAQVVF010000016.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_5721_length_21860_cov_6.279253_Sandtown_F1, whole genome shotgun sequence 21,860
JAQVVF010000017.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_6522_length_20248_cov_5.913821_Sandtown_F1, whole genome shotgun sequence 20,248
JAQVVF010000018.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_26623_length_8843_cov_2.867485_Sandtown_F1, whole genome shotgun sequence 8,843
JAQVVF010000019.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_43113_length_6600_cov_6.276070_Sandtown_F1, whole genome shotgun sequence 6,600
JAQVVF010000020.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_45186_length_6411_cov_3.068587_Sandtown_F1, whole genome shotgun sequence 6,411
JAQVVF010000021.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_60645_length_5360_cov_4.167972_Sandtown_F1, whole genome shotgun sequence 5,360
JAQVVF010000022.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_66054_length_5088_cov_4.375932_Sandtown_F1, whole genome shotgun sequence 5,088
JAQVVF010000023.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_71341_length_4856_cov_2.912455_Sandtown_F1, whole genome shotgun sequence 4,856
JAQVVF010000024.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_92812_length_4139_cov_4.292622_Sandtown_F1, whole genome shotgun sequence 4,139
JAQVVF010000025.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_102148_length_3904_cov_6.161769_Sandtown_F1, whole genome shotgun sequence 3,904
JAQVVF010000026.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_121721_length_3515_cov_2.737603_Sandtown_F1, whole genome shotgun sequence 3,515
JAQVVF010000027.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_123512_length_3484_cov_2.577301_Sandtown_F1, whole genome shotgun sequence 3,484
JAQVVF010000028.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_154377_length_3049_cov_3.662902_Sandtown_F1, whole genome shotgun sequence 3,049
JAQVVF010000029.1 MAG: Patescibacteria group bacterium isolate STF1_73 NODE_180119_length_2779_cov_11.199472_Sandtown_F1, whole genome shotgun sequence 2,779

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory