fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA1049 sp028702135 STF1_200

Genome identifier: GCA_028702135.1

NCBI assembly name: ASM2870213v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Oscillospirales, CAG-382, UBA1049, UBA1049 sp028702135

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales

Scaffolds: 38

Genes: 1,879 Protein-coding: 1,802 RNAs: 53 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQVPJ010000001.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_68_length_183809_cov_5.664180_Sandtown_F1, whole genome shotgun sequence 183,809
JAQVPJ010000002.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_89_length_164337_cov_5.151994_Sandtown_F1, whole genome shotgun sequence 164,337
JAQVPJ010000003.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_166_length_129430_cov_5.473500_Sandtown_F1, whole genome shotgun sequence 129,430
JAQVPJ010000004.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_184_length_125111_cov_4.922734_Sandtown_F1, whole genome shotgun sequence 125,111
JAQVPJ010000005.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_202_length_119625_cov_5.997674_Sandtown_F1, whole genome shotgun sequence 119,625
JAQVPJ010000006.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_219_length_115956_cov_5.403638_Sandtown_F1, whole genome shotgun sequence 115,956
JAQVPJ010000007.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_339_length_97104_cov_5.417078_Sandtown_F1, whole genome shotgun sequence 97,104
JAQVPJ010000008.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_418_length_87406_cov_5.587392_Sandtown_F1, whole genome shotgun sequence 87,406
JAQVPJ010000009.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_459_length_83714_cov_5.522653_Sandtown_F1, whole genome shotgun sequence 83,714
JAQVPJ010000010.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_524_length_78811_cov_5.050963_Sandtown_F1, whole genome shotgun sequence 78,811
JAQVPJ010000011.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_679_length_70245_cov_5.244231_Sandtown_F1, whole genome shotgun sequence 70,245
JAQVPJ010000012.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_820_length_63613_cov_5.244180_Sandtown_F1, whole genome shotgun sequence 63,613
JAQVPJ010000013.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_1074_length_55360_cov_5.166241_Sandtown_F1, whole genome shotgun sequence 55,360
JAQVPJ010000014.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_1116_length_53925_cov_5.128276_Sandtown_F1, whole genome shotgun sequence 53,925
JAQVPJ010000015.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_1198_length_52301_cov_5.461801_Sandtown_F1, whole genome shotgun sequence 52,301
JAQVPJ010000016.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_1236_length_51463_cov_5.402778_Sandtown_F1, whole genome shotgun sequence 51,463
JAQVPJ010000017.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_1238_length_51440_cov_5.708164_Sandtown_F1, whole genome shotgun sequence 51,440
JAQVPJ010000018.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_1283_length_50204_cov_5.104000_Sandtown_F1, whole genome shotgun sequence 50,204
JAQVPJ010000019.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_1594_length_44861_cov_5.222001_Sandtown_F1, whole genome shotgun sequence 44,861
JAQVPJ010000020.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_1797_length_42057_cov_5.452755_Sandtown_F1, whole genome shotgun sequence 42,057
JAQVPJ010000021.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_2283_length_36959_cov_5.200179_Sandtown_F1, whole genome shotgun sequence 36,959
JAQVPJ010000022.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_2440_length_35654_cov_5.502801_Sandtown_F1, whole genome shotgun sequence 35,654
JAQVPJ010000023.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_3002_length_31551_cov_7.329907_Sandtown_F1, whole genome shotgun sequence 31,551
JAQVPJ010000024.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_3841_length_27564_cov_5.025258_Sandtown_F1, whole genome shotgun sequence 27,564
JAQVPJ010000025.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_4727_length_24418_cov_5.528220_Sandtown_F1, whole genome shotgun sequence 24,418
JAQVPJ010000026.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_8631_length_17227_cov_5.104854_Sandtown_F1, whole genome shotgun sequence 17,227
JAQVPJ010000027.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_14668_length_12660_cov_5.158541_Sandtown_F1, whole genome shotgun sequence 12,660
JAQVPJ010000028.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_26196_length_8931_cov_5.479328_Sandtown_F1, whole genome shotgun sequence 8,931
JAQVPJ010000029.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_27988_length_8585_cov_3.262710_Sandtown_F1, whole genome shotgun sequence 8,585
JAQVPJ010000030.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_40223_length_6881_cov_4.815369_Sandtown_F1, whole genome shotgun sequence 6,881
JAQVPJ010000031.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_53324_length_5803_cov_6.067653_Sandtown_F1, whole genome shotgun sequence 5,803
JAQVPJ010000032.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_54820_length_5702_cov_9.053632_Sandtown_F1, whole genome shotgun sequence 5,702
JAQVPJ010000033.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_58379_length_5485_cov_3.734043_Sandtown_F1, whole genome shotgun sequence 5,485
JAQVPJ010000034.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_62752_length_5251_cov_6.240242_Sandtown_F1, whole genome shotgun sequence 5,251
JAQVPJ010000035.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_100718_length_3938_cov_3.640514_Sandtown_F1, whole genome shotgun sequence 3,938
JAQVPJ010000036.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_112657_length_3682_cov_2.311674_Sandtown_F1, whole genome shotgun sequence 3,682
JAQVPJ010000037.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_141349_length_3215_cov_3.055699_Sandtown_F1, whole genome shotgun sequence 3,215
JAQVPJ010000038.1 MAG: Eubacteriales bacterium isolate STF1_200 NODE_202541_length_2593_cov_1.890511_Sandtown_F1, whole genome shotgun sequence 2,593

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory