fast.genomicscompare 6,575 genera of bacteria & archaea

 

STD2-102 sp028710495 STD2_102

Genome identifier: GCA_028710495.1

NCBI assembly name: ASM2871049v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Christensenellales, CAG-917, STD2-102, STD2-102 sp028710495

NCBI taxonomy: Bacteria, Bacillota, Clostridia

Scaffolds: 39

Genes: 1,313 Protein-coding: 1,256 RNAs: 48 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQUST010000001.1 MAG: Clostridia bacterium isolate STD2_102 NODE_78_length_227712_cov_8.065413_Sandtown_D2, whole genome shotgun sequence 227,712
JAQUST010000002.1 MAG: Clostridia bacterium isolate STD2_102 NODE_378_length_130013_cov_9.046002_Sandtown_D2, whole genome shotgun sequence 130,013
JAQUST010000003.1 MAG: Clostridia bacterium isolate STD2_102 NODE_443_length_121155_cov_8.214826_Sandtown_D2, whole genome shotgun sequence 121,155
JAQUST010000004.1 MAG: Clostridia bacterium isolate STD2_102 NODE_683_length_96718_cov_8.313269_Sandtown_D2, whole genome shotgun sequence 96,718
JAQUST010000005.1 MAG: Clostridia bacterium isolate STD2_102 NODE_732_length_92949_cov_9.695923_Sandtown_D2, whole genome shotgun sequence 92,949
JAQUST010000006.1 MAG: Clostridia bacterium isolate STD2_102 NODE_948_length_81375_cov_9.618329_Sandtown_D2, whole genome shotgun sequence 81,375
JAQUST010000007.1 MAG: Clostridia bacterium isolate STD2_102 NODE_1306_length_69564_cov_9.657042_Sandtown_D2, whole genome shotgun sequence 69,564
JAQUST010000008.1 MAG: Clostridia bacterium isolate STD2_102 NODE_1740_length_59085_cov_8.126327_Sandtown_D2, whole genome shotgun sequence 59,085
JAQUST010000009.1 MAG: Clostridia bacterium isolate STD2_102 NODE_1777_length_58509_cov_10.113802_Sandtown_D2, whole genome shotgun sequence 58,509
JAQUST010000010.1 MAG: Clostridia bacterium isolate STD2_102 NODE_1987_length_54957_cov_8.011235_Sandtown_D2, whole genome shotgun sequence 54,957
JAQUST010000011.1 MAG: Clostridia bacterium isolate STD2_102 NODE_2049_length_53864_cov_8.952100_Sandtown_D2, whole genome shotgun sequence 53,864
JAQUST010000012.1 MAG: Clostridia bacterium isolate STD2_102 NODE_2051_length_53859_cov_9.437914_Sandtown_D2, whole genome shotgun sequence 53,859
JAQUST010000013.1 MAG: Clostridia bacterium isolate STD2_102 NODE_2820_length_44675_cov_9.642745_Sandtown_D2, whole genome shotgun sequence 44,675
JAQUST010000014.1 MAG: Clostridia bacterium isolate STD2_102 NODE_2842_length_44513_cov_7.931532_Sandtown_D2, whole genome shotgun sequence 44,513
JAQUST010000015.1 MAG: Clostridia bacterium isolate STD2_102 NODE_3269_length_40996_cov_7.955345_Sandtown_D2, whole genome shotgun sequence 40,996
JAQUST010000016.1 MAG: Clostridia bacterium isolate STD2_102 NODE_4655_length_33206_cov_9.663865_Sandtown_D2, whole genome shotgun sequence 33,206
JAQUST010000017.1 MAG: Clostridia bacterium isolate STD2_102 NODE_5607_length_29167_cov_8.977686_Sandtown_D2, whole genome shotgun sequence 29,167
JAQUST010000018.1 MAG: Clostridia bacterium isolate STD2_102 NODE_6299_length_27017_cov_9.713128_Sandtown_D2, whole genome shotgun sequence 27,017
JAQUST010000019.1 MAG: Clostridia bacterium isolate STD2_102 NODE_6363_length_26834_cov_8.943760_Sandtown_D2, whole genome shotgun sequence 26,834
JAQUST010000020.1 MAG: Clostridia bacterium isolate STD2_102 NODE_6583_length_26152_cov_7.829472_Sandtown_D2, whole genome shotgun sequence 26,152
JAQUST010000021.1 MAG: Clostridia bacterium isolate STD2_102 NODE_7234_length_24540_cov_8.423340_Sandtown_D2, whole genome shotgun sequence 24,540
JAQUST010000022.1 MAG: Clostridia bacterium isolate STD2_102 NODE_7758_length_23475_cov_8.399263_Sandtown_D2, whole genome shotgun sequence 23,475
JAQUST010000023.1 MAG: Clostridia bacterium isolate STD2_102 NODE_9998_length_19802_cov_10.052554_Sandtown_D2, whole genome shotgun sequence 19,802
JAQUST010000024.1 MAG: Clostridia bacterium isolate STD2_102 NODE_12098_length_17369_cov_8.248579_Sandtown_D2, whole genome shotgun sequence 17,369
JAQUST010000025.1 MAG: Clostridia bacterium isolate STD2_102 NODE_12365_length_17111_cov_10.109809_Sandtown_D2, whole genome shotgun sequence 17,111
JAQUST010000026.1 MAG: Clostridia bacterium isolate STD2_102 NODE_18658_length_12902_cov_8.223953_Sandtown_D2, whole genome shotgun sequence 12,902
JAQUST010000027.1 MAG: Clostridia bacterium isolate STD2_102 NODE_25524_length_10341_cov_9.259448_Sandtown_D2, whole genome shotgun sequence 10,341
JAQUST010000028.1 MAG: Clostridia bacterium isolate STD2_102 NODE_25543_length_10337_cov_9.042899_Sandtown_D2, whole genome shotgun sequence 10,337
JAQUST010000029.1 MAG: Clostridia bacterium isolate STD2_102 NODE_26528_length_10072_cov_10.200201_Sandtown_D2, whole genome shotgun sequence 10,072
JAQUST010000030.1 MAG: Clostridia bacterium isolate STD2_102 NODE_40268_length_7547_cov_8.503774_Sandtown_D2, whole genome shotgun sequence 7,547
JAQUST010000031.1 MAG: Clostridia bacterium isolate STD2_102 NODE_49991_length_6500_cov_9.720069_Sandtown_D2, whole genome shotgun sequence 6,500
JAQUST010000032.1 MAG: Clostridia bacterium isolate STD2_102 NODE_56743_length_5980_cov_11.235606_Sandtown_D2, whole genome shotgun sequence 5,980
JAQUST010000033.1 MAG: Clostridia bacterium isolate STD2_102 NODE_58559_length_5859_cov_7.937020_Sandtown_D2, whole genome shotgun sequence 5,859
JAQUST010000034.1 MAG: Clostridia bacterium isolate STD2_102 NODE_73002_length_5065_cov_9.478534_Sandtown_D2, whole genome shotgun sequence 5,065
JAQUST010000035.1 MAG: Clostridia bacterium isolate STD2_102 NODE_85118_length_4592_cov_8.452184_Sandtown_D2, whole genome shotgun sequence 4,592
JAQUST010000036.1 MAG: Clostridia bacterium isolate STD2_102 NODE_93897_length_4312_cov_7.757228_Sandtown_D2, whole genome shotgun sequence 4,312
JAQUST010000037.1 MAG: Clostridia bacterium isolate STD2_102 NODE_115186_length_3789_cov_8.084926_Sandtown_D2, whole genome shotgun sequence 3,789
JAQUST010000038.1 MAG: Clostridia bacterium isolate STD2_102 NODE_142912_length_3314_cov_13.747411_Sandtown_D2, whole genome shotgun sequence 3,314
JAQUST010000039.1 MAG: Clostridia bacterium isolate STD2_102 NODE_206048_length_2648_cov_13.518445_Sandtown_D2, whole genome shotgun sequence 2,648

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory