fast.genomicscompare 6,575 genera of bacteria & archaea

 

JALOCB01 sp023227985 STB_161

Genome identifier: GCA_028711865.1

NCBI assembly name: ASM2871186v1

GTDB taxonomy: Bacteria, Omnitrophota, Koll11, Gygaellales, Profunditerraquicolaceae, JALOCB01, JALOCB01 sp023227985

NCBI taxonomy: Bacteria, Candidatus Omnitrophota

Scaffolds: 15

Genes: 1,721 Protein-coding: 1,667 RNAs: 50 pseudogenes: 4

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQTRK010000001.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_61_length_336877_cov_11.863952_Sandtown_B, whole genome shotgun sequence 336,877
JAQTRK010000002.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_118_length_229619_cov_11.004658_Sandtown_B, whole genome shotgun sequence 229,619
JAQTRK010000003.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_154_length_203198_cov_11.728627_Sandtown_B, whole genome shotgun sequence 203,198
JAQTRK010000004.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_173_length_182702_cov_11.536771_Sandtown_B, whole genome shotgun sequence 182,702
JAQTRK010000005.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_185_length_177336_cov_11.163079_Sandtown_B, whole genome shotgun sequence 177,336
JAQTRK010000006.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_275_length_144513_cov_11.468619_Sandtown_B, whole genome shotgun sequence 144,513
JAQTRK010000007.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_293_length_139976_cov_12.037154_Sandtown_B, whole genome shotgun sequence 139,976
JAQTRK010000008.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_403_length_109774_cov_11.664423_Sandtown_B, whole genome shotgun sequence 109,774
JAQTRK010000009.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_514_length_91850_cov_11.222234_Sandtown_B, whole genome shotgun sequence 91,850
JAQTRK010000010.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_658_length_79058_cov_11.077017_Sandtown_B, whole genome shotgun sequence 79,058
JAQTRK010000011.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_1141_length_56705_cov_12.605306_Sandtown_B, whole genome shotgun sequence 56,705
JAQTRK010000012.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_1636_length_45814_cov_11.201742_Sandtown_B, whole genome shotgun sequence 45,814
JAQTRK010000013.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_8793_length_15789_cov_9.356659_Sandtown_B, whole genome shotgun sequence 15,789
JAQTRK010000014.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_28434_length_7427_cov_11.233973_Sandtown_B, whole genome shotgun sequence 7,427
JAQTRK010000015.1 MAG: Candidatus Omnitrophota bacterium isolate STB_161 NODE_141525_length_2922_cov_8.880143_Sandtown_B, whole genome shotgun sequence 2,922

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory