fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA1562 sp028716705 STD1_220

Genome identifier: GCA_028716705.1

NCBI assembly name: ASM2871670v1

GTDB taxonomy: Bacteria, Omnitrophota, Koll11, Gygaellales, Profunditerraquicolaceae, UBA1562, UBA1562 sp028716705

NCBI taxonomy: Bacteria, Candidatus Omnitrophota

Scaffolds: 90

Genes: 1,817 Protein-coding: 1,762 RNAs: 48 pseudogenes: 7

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAQUPI010000001.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_163_length_160832_cov_4.317501_Sandtown_D1, whole genome shotgun sequence 160,832
JAQUPI010000002.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_307_length_120172_cov_4.789637_Sandtown_D1, whole genome shotgun sequence 120,172
JAQUPI010000003.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_710_length_72004_cov_4.591789_Sandtown_D1, whole genome shotgun sequence 72,004
JAQUPI010000004.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_833_length_66324_cov_4.395834_Sandtown_D1, whole genome shotgun sequence 66,324
JAQUPI010000005.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_884_length_63929_cov_3.997633_Sandtown_D1, whole genome shotgun sequence 63,929
JAQUPI010000006.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_1217_length_52332_cov_5.115104_Sandtown_D1, whole genome shotgun sequence 52,332
JAQUPI010000007.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_1303_length_50445_cov_4.713065_Sandtown_D1, whole genome shotgun sequence 50,445
JAQUPI010000008.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_1352_length_49441_cov_4.325830_Sandtown_D1, whole genome shotgun sequence 49,441
JAQUPI010000009.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_1611_length_44552_cov_4.500777_Sandtown_D1, whole genome shotgun sequence 44,552
JAQUPI010000010.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_1933_length_40198_cov_4.355519_Sandtown_D1, whole genome shotgun sequence 40,198
JAQUPI010000011.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_1943_length_40031_cov_4.424068_Sandtown_D1, whole genome shotgun sequence 40,031
JAQUPI010000012.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_2132_length_37753_cov_4.475655_Sandtown_D1, whole genome shotgun sequence 37,753
JAQUPI010000013.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_2226_length_36713_cov_4.766987_Sandtown_D1, whole genome shotgun sequence 36,713
JAQUPI010000014.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_2244_length_36527_cov_4.186538_Sandtown_D1, whole genome shotgun sequence 36,527
JAQUPI010000015.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_2358_length_35467_cov_3.808206_Sandtown_D1, whole genome shotgun sequence 35,467
JAQUPI010000016.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_2569_length_33483_cov_4.388985_Sandtown_D1, whole genome shotgun sequence 33,483
JAQUPI010000017.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_2696_length_32555_cov_4.586253_Sandtown_D1, whole genome shotgun sequence 32,555
JAQUPI010000018.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_2878_length_31394_cov_4.060447_Sandtown_D1, whole genome shotgun sequence 31,394
JAQUPI010000019.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_3055_length_30434_cov_3.830468_Sandtown_D1, whole genome shotgun sequence 30,434
JAQUPI010000020.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_3197_length_29666_cov_4.128813_Sandtown_D1, whole genome shotgun sequence 29,666
JAQUPI010000021.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_3642_length_27267_cov_4.821518_Sandtown_D1, whole genome shotgun sequence 27,267
JAQUPI010000022.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_3704_length_26976_cov_3.996089_Sandtown_D1, whole genome shotgun sequence 26,976
JAQUPI010000023.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_3745_length_26807_cov_3.805172_Sandtown_D1, whole genome shotgun sequence 26,807
JAQUPI010000024.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_3746_length_26798_cov_3.970567_Sandtown_D1, whole genome shotgun sequence 26,798
JAQUPI010000025.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_3756_length_26757_cov_4.457454_Sandtown_D1, whole genome shotgun sequence 26,757
JAQUPI010000026.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_4038_length_25660_cov_4.797282_Sandtown_D1, whole genome shotgun sequence 25,660
JAQUPI010000027.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_4171_length_25115_cov_3.949856_Sandtown_D1, whole genome shotgun sequence 25,115
JAQUPI010000028.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_4260_length_24837_cov_4.294537_Sandtown_D1, whole genome shotgun sequence 24,837
JAQUPI010000029.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_4794_length_23091_cov_5.038930_Sandtown_D1, whole genome shotgun sequence 23,091
JAQUPI010000030.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_5237_length_21935_cov_4.377155_Sandtown_D1, whole genome shotgun sequence 21,935
JAQUPI010000031.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_5405_length_21487_cov_4.116807_Sandtown_D1, whole genome shotgun sequence 21,487
JAQUPI010000032.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_5551_length_21163_cov_3.987973_Sandtown_D1, whole genome shotgun sequence 21,163
JAQUPI010000033.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_5737_length_20734_cov_4.381618_Sandtown_D1, whole genome shotgun sequence 20,734
JAQUPI010000034.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_5753_length_20701_cov_3.655536_Sandtown_D1, whole genome shotgun sequence 20,701
JAQUPI010000035.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_6271_length_19654_cov_4.594152_Sandtown_D1, whole genome shotgun sequence 19,654
JAQUPI010000036.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_7371_length_17791_cov_3.785439_Sandtown_D1, whole genome shotgun sequence 17,791
JAQUPI010000037.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_7483_length_17633_cov_4.320633_Sandtown_D1, whole genome shotgun sequence 17,633
JAQUPI010000038.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_7713_length_17327_cov_4.290291_Sandtown_D1, whole genome shotgun sequence 17,327
JAQUPI010000039.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_8105_length_16781_cov_3.563768_Sandtown_D1, whole genome shotgun sequence 16,781
JAQUPI010000040.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_8691_length_16104_cov_4.503286_Sandtown_D1, whole genome shotgun sequence 16,104
JAQUPI010000041.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_8828_length_15968_cov_4.033394_Sandtown_D1, whole genome shotgun sequence 15,968
JAQUPI010000042.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_8986_length_15805_cov_4.479143_Sandtown_D1, whole genome shotgun sequence 15,805
JAQUPI010000043.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_10417_length_14547_cov_4.008877_Sandtown_D1, whole genome shotgun sequence 14,547
JAQUPI010000044.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_11476_length_13743_cov_3.908343_Sandtown_D1, whole genome shotgun sequence 13,743
JAQUPI010000045.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_13670_length_12383_cov_3.882180_Sandtown_D1, whole genome shotgun sequence 12,383
JAQUPI010000046.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_14616_length_11894_cov_3.910173_Sandtown_D1, whole genome shotgun sequence 11,894
JAQUPI010000047.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_15175_length_11627_cov_3.835826_Sandtown_D1, whole genome shotgun sequence 11,627
JAQUPI010000048.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_16660_length_11000_cov_4.477053_Sandtown_D1, whole genome shotgun sequence 11,000
JAQUPI010000049.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_16691_length_10988_cov_5.048891_Sandtown_D1, whole genome shotgun sequence 10,988
JAQUPI010000050.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_17744_length_10607_cov_4.563168_Sandtown_D1, whole genome shotgun sequence 10,607
JAQUPI010000051.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_17931_length_10543_cov_4.574693_Sandtown_D1, whole genome shotgun sequence 10,543
JAQUPI010000052.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_18673_length_10294_cov_4.222288_Sandtown_D1, whole genome shotgun sequence 10,274
JAQUPI010000053.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_18857_length_10233_cov_4.950425_Sandtown_D1, whole genome shotgun sequence 10,233
JAQUPI010000054.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_18939_length_10214_cov_5.235253_Sandtown_D1, whole genome shotgun sequence 10,195
JAQUPI010000055.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_21295_length_9526_cov_4.288754_Sandtown_D1, whole genome shotgun sequence 9,526
JAQUPI010000056.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_22976_length_9105_cov_4.794609_Sandtown_D1, whole genome shotgun sequence 9,105
JAQUPI010000057.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_22996_length_9101_cov_4.410519_Sandtown_D1, whole genome shotgun sequence 9,101
JAQUPI010000058.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_25658_length_8553_cov_4.043200_Sandtown_D1, whole genome shotgun sequence 8,553
JAQUPI010000059.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_30287_length_7765_cov_4.130793_Sandtown_D1, whole genome shotgun sequence 7,765
JAQUPI010000060.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_32031_length_7515_cov_3.019356_Sandtown_D1, whole genome shotgun sequence 7,515
JAQUPI010000061.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_35553_length_7070_cov_2.713524_Sandtown_D1, whole genome shotgun sequence 7,070
JAQUPI010000062.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_36396_length_6972_cov_3.953251_Sandtown_D1, whole genome shotgun sequence 6,972
JAQUPI010000063.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_36439_length_6968_cov_4.001462_Sandtown_D1, whole genome shotgun sequence 6,968
JAQUPI010000064.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_42895_length_6354_cov_4.663080_Sandtown_D1, whole genome shotgun sequence 6,354
JAQUPI010000065.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_45100_length_6176_cov_3.711853_Sandtown_D1, whole genome shotgun sequence 6,176
JAQUPI010000066.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_46035_length_6102_cov_4.408536_Sandtown_D1, whole genome shotgun sequence 6,102
JAQUPI010000067.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_46528_length_6068_cov_3.559838_Sandtown_D1, whole genome shotgun sequence 6,068
JAQUPI010000068.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_50892_length_5765_cov_4.154487_Sandtown_D1, whole genome shotgun sequence 5,765
JAQUPI010000069.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_53012_length_5640_cov_3.213133_Sandtown_D1, whole genome shotgun sequence 5,640
JAQUPI010000070.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_56427_length_5441_cov_4.654686_Sandtown_D1, whole genome shotgun sequence 5,441
JAQUPI010000071.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_58079_length_5354_cov_4.111728_Sandtown_D1, whole genome shotgun sequence 5,354
JAQUPI010000072.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_59650_length_5277_cov_3.498058_Sandtown_D1, whole genome shotgun sequence 5,277
JAQUPI010000073.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_65120_length_5027_cov_2.869796_Sandtown_D1, whole genome shotgun sequence 5,027
JAQUPI010000074.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_67726_length_4920_cov_3.219487_Sandtown_D1, whole genome shotgun sequence 4,920
JAQUPI010000075.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_68275_length_4900_cov_3.921643_Sandtown_D1, whole genome shotgun sequence 4,900
JAQUPI010000076.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_69317_length_4860_cov_2.838791_Sandtown_D1, whole genome shotgun sequence 4,860
JAQUPI010000077.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_70646_length_4809_cov_3.697565_Sandtown_D1, whole genome shotgun sequence 4,809
JAQUPI010000078.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_81574_length_4443_cov_2.367238_Sandtown_D1, whole genome shotgun sequence 4,443
JAQUPI010000079.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_85625_length_4325_cov_3.660791_Sandtown_D1, whole genome shotgun sequence 4,325
JAQUPI010000080.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_86735_length_4294_cov_4.168467_Sandtown_D1, whole genome shotgun sequence 4,294
JAQUPI010000081.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_89927_length_4209_cov_4.446840_Sandtown_D1, whole genome shotgun sequence 4,209
JAQUPI010000082.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_96974_length_4041_cov_4.643076_Sandtown_D1, whole genome shotgun sequence 4,041
JAQUPI010000083.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_126189_length_3502_cov_3.272889_Sandtown_D1, whole genome shotgun sequence 3,502
JAQUPI010000084.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_149915_length_3192_cov_3.633279_Sandtown_D1, whole genome shotgun sequence 3,192
JAQUPI010000085.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_161705_length_3067_cov_4.601361_Sandtown_D1, whole genome shotgun sequence 3,067
JAQUPI010000086.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_165000_length_3035_cov_1.965268_Sandtown_D1, whole genome shotgun sequence 3,035
JAQUPI010000087.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_167047_length_3015_cov_4.475762_Sandtown_D1, whole genome shotgun sequence 3,015
JAQUPI010000088.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_190368_length_2817_cov_4.188476_Sandtown_D1, whole genome shotgun sequence 2,817
JAQUPI010000089.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_204143_length_2714_cov_3.787785_Sandtown_D1, whole genome shotgun sequence 2,714
JAQUPI010000090.1 MAG: Candidatus Omnitrophota bacterium isolate STD1_220 NODE_204753_length_2710_cov_2.476190_Sandtown_D1, whole genome shotgun sequence 2,710

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory