fast.genomicscompare 6,575 genera of bacteria & archaea

 

CAIXLI01 sp028866275 REEB112

Genome identifier: GCA_028866275.1

NCBI assembly name: ASM2886627v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, UBA9219, UBA9219, CAIXLI01, CAIXLI01 sp028866275

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 78

Genes: 2,274 Protein-coding: 2,208 RNAs: 54 pseudogenes: 12

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAGWIK010000001.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_20, whole genome shotgun sequence 226,522
JAGWIK010000002.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_69, whole genome shotgun sequence 134,799
JAGWIK010000003.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_87, whole genome shotgun sequence 124,535
JAGWIK010000004.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_116, whole genome shotgun sequence 110,023
JAGWIK010000005.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_123, whole genome shotgun sequence 106,200
JAGWIK010000006.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_128, whole genome shotgun sequence 104,892
JAGWIK010000007.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_157, whole genome shotgun sequence 95,540
JAGWIK010000008.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_244, whole genome shotgun sequence 78,317
JAGWIK010000009.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_252, whole genome shotgun sequence 77,372
JAGWIK010000010.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_292, whole genome shotgun sequence 71,933
JAGWIK010000011.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_293, whole genome shotgun sequence 71,700
JAGWIK010000012.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_370, whole genome shotgun sequence 64,953
JAGWIK010000013.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_396, whole genome shotgun sequence 63,157
JAGWIK010000014.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_500, whole genome shotgun sequence 57,415
JAGWIK010000015.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_607, whole genome shotgun sequence 52,092
JAGWIK010000016.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_910, whole genome shotgun sequence 41,523
JAGWIK010000017.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_976, whole genome shotgun sequence 40,368
JAGWIK010000018.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1035, whole genome shotgun sequence 39,592
JAGWIK010000019.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1112, whole genome shotgun sequence 38,581
JAGWIK010000020.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1359, whole genome shotgun sequence 35,100
JAGWIK010000021.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1592, whole genome shotgun sequence 32,249
JAGWIK010000022.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1612, whole genome shotgun sequence 32,031
JAGWIK010000023.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1616, whole genome shotgun sequence 31,980
JAGWIK010000024.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1882, whole genome shotgun sequence 28,671
JAGWIK010000025.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1885, whole genome shotgun sequence 28,601
JAGWIK010000026.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_1974, whole genome shotgun sequence 27,787
JAGWIK010000027.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_2113, whole genome shotgun sequence 26,672
JAGWIK010000028.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_2147, whole genome shotgun sequence 26,312
JAGWIK010000029.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_2692, whole genome shotgun sequence 22,549
JAGWIK010000030.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_3030, whole genome shotgun sequence 20,979
JAGWIK010000031.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_3138, whole genome shotgun sequence 20,583
JAGWIK010000032.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_3418, whole genome shotgun sequence 19,438
JAGWIK010000033.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_3438, whole genome shotgun sequence 19,356
JAGWIK010000034.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_4148, whole genome shotgun sequence 17,098
JAGWIK010000035.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_4262, whole genome shotgun sequence 16,835
JAGWIK010000036.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_4676, whole genome shotgun sequence 15,795
JAGWIK010000037.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_6048, whole genome shotgun sequence 13,228
JAGWIK010000038.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_6610, whole genome shotgun sequence 12,452
JAGWIK010000039.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_7764, whole genome shotgun sequence 11,157
JAGWIK010000040.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_10298, whole genome shotgun sequence 9,190
JAGWIK010000041.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_10941, whole genome shotgun sequence 8,805
JAGWIK010000042.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_11896, whole genome shotgun sequence 8,293
JAGWIK010000043.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_16376, whole genome shotgun sequence 6,590
JAGWIK010000044.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_17087, whole genome shotgun sequence 6,388
JAGWIK010000045.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_18268, whole genome shotgun sequence 6,093
JAGWIK010000046.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_19998, whole genome shotgun sequence 5,724
JAGWIK010000047.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_22102, whole genome shotgun sequence 5,332
JAGWIK010000048.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_23808, whole genome shotgun sequence 5,053
JAGWIK010000049.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_25101, whole genome shotgun sequence 4,868
JAGWIK010000050.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_26314, whole genome shotgun sequence 4,709
JAGWIK010000051.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_26673, whole genome shotgun sequence 4,663
JAGWIK010000052.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_34108, whole genome shotgun sequence 3,918
JAGWIK010000053.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_38695, whole genome shotgun sequence 3,572
JAGWIK010000054.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_45134, whole genome shotgun sequence 3,200
JAGWIK010000055.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_46184, whole genome shotgun sequence 3,147
JAGWIK010000056.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_48903, whole genome shotgun sequence 3,022
JAGWIK010000057.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_49527, whole genome shotgun sequence 2,996
JAGWIK010000058.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_51907, whole genome shotgun sequence 2,894
JAGWIK010000059.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_57723, whole genome shotgun sequence 2,680
JAGWIK010000060.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_58472, whole genome shotgun sequence 2,654
JAGWIK010000061.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_60101, whole genome shotgun sequence 2,601
JAGWIK010000062.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_69806, whole genome shotgun sequence 2,338
JAGWIK010000063.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_71302, whole genome shotgun sequence 2,303
JAGWIK010000064.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_91645, whole genome shotgun sequence 1,929
JAGWIK010000065.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_91679, whole genome shotgun sequence 1,928
JAGWIK010000066.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_94583, whole genome shotgun sequence 1,887
JAGWIK010000067.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_107215, whole genome shotgun sequence 1,726
JAGWIK010000068.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_115083, whole genome shotgun sequence 1,641
JAGWIK010000069.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_126971, whole genome shotgun sequence 1,531
JAGWIK010000070.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_135506, whole genome shotgun sequence 1,461
JAGWIK010000071.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_159130, whole genome shotgun sequence 1,305
JAGWIK010000072.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_166786, whole genome shotgun sequence 1,263
JAGWIK010000073.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_194611, whole genome shotgun sequence 1,135
JAGWIK010000074.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_201086, whole genome shotgun sequence 1,110
JAGWIK010000075.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_206649, whole genome shotgun sequence 1,090
JAGWIK010000076.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_224352, whole genome shotgun sequence 1,031
JAGWIK010000077.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_225647, whole genome shotgun sequence 1,027
JAGWIK010000078.1 MAG: Alphaproteobacteria bacterium isolate REEB112 contig-150_227982, whole genome shotgun sequence 1,020

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory