fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAJZYL01 sp021792955 YS4_bin.66

Genome identifier: GCA_029786615.1

NCBI assembly name: ASM2978661v1

GTDB taxonomy: Archaea, Thermoproteota, Nitrososphaeria, Conexivisphaerales, UBA164, JAJZYL01, JAJZYL01 sp021792955

NCBI taxonomy: Archaea, Nitrososphaerota

Scaffolds: 27

Genes: 1,492 Protein-coding: 1,432 RNAs: 50 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAFLXJ010000001.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_1_length_353445_cov_7.824947, whole genome shotgun sequence 353,445
JAFLXJ010000002.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_2_length_168892_cov_5.932701, whole genome shotgun sequence 168,892
JAFLXJ010000003.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_3_length_121136_cov_6.091740, whole genome shotgun sequence 121,136
JAFLXJ010000004.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_4_length_100496_cov_5.825242, whole genome shotgun sequence 100,496
JAFLXJ010000005.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_5_length_90434_cov_5.651803, whole genome shotgun sequence 90,434
JAFLXJ010000006.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_6_length_79825_cov_5.883847, whole genome shotgun sequence 79,825
JAFLXJ010000007.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_7_length_58778_cov_5.055468, whole genome shotgun sequence 58,778
JAFLXJ010000008.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_8_length_51987_cov_5.925082, whole genome shotgun sequence 51,987
JAFLXJ010000009.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_9_length_42711_cov_4.977084, whole genome shotgun sequence 42,711
JAFLXJ010000010.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_10_length_35941_cov_5.360250, whole genome shotgun sequence 35,941
JAFLXJ010000011.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_11_length_33406_cov_5.325242, whole genome shotgun sequence 33,406
JAFLXJ010000012.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_12_length_30485_cov_5.175908, whole genome shotgun sequence 30,485
JAFLXJ010000013.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_13_length_27451_cov_5.622525, whole genome shotgun sequence 27,451
JAFLXJ010000014.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_14_length_25401_cov_6.248184, whole genome shotgun sequence 25,401
JAFLXJ010000015.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_15_length_25208_cov_5.929529, whole genome shotgun sequence 25,208
JAFLXJ010000016.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_16_length_22885_cov_7.497589, whole genome shotgun sequence 22,885
JAFLXJ010000017.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_17_length_21739_cov_5.525713, whole genome shotgun sequence 21,739
JAFLXJ010000018.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_18_length_20426_cov_5.190132, whole genome shotgun sequence 20,426
JAFLXJ010000019.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_19_length_17565_cov_5.583886, whole genome shotgun sequence 17,565
JAFLXJ010000020.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_20_length_15240_cov_4.684891, whole genome shotgun sequence 15,240
JAFLXJ010000021.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_21_length_13764_cov_4.892599, whole genome shotgun sequence 13,764
JAFLXJ010000022.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_22_length_10304_cov_5.140217, whole genome shotgun sequence 10,304
JAFLXJ010000023.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_23_length_8033_cov_6.404726, whole genome shotgun sequence 8,033
JAFLXJ010000024.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_24_length_7350_cov_4.291352, whole genome shotgun sequence 7,350
JAFLXJ010000025.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_25_length_7094_cov_5.294285, whole genome shotgun sequence 7,094
JAFLXJ010000026.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_26_length_6330_cov_4.135775, whole genome shotgun sequence 6,330
JAFLXJ010000027.1 MAG: Nitrososphaerota archaeon isolate YS4_bin.66 NODE_27_length_3032_cov_2.305584, whole genome shotgun sequence 3,032

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory