fast.genomicscompare 6,575 genera of bacteria & archaea

 

2-12-FULL-60-25 sp003576745 UHB

Genome identifier: GCA_030272835.1

NCBI assembly name: ASM3027283v1

GTDB taxonomy: Bacteria, Patescibacteria, ABY1, SG8-24, 2-12-FULL-60-25, 2-12-FULL-60-25, 2-12-FULL-60-25 sp003576745

NCBI taxonomy: Bacteria, Candidatus Uhrbacteria

Scaffolds: 13

Genes: 1,005 Protein-coding: 951 RNAs: 51 pseudogenes: 3

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
SZOQ01000001.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_19, whole genome shotgun sequence 207,481
SZOQ01000002.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_45, whole genome shotgun sequence 147,314
SZOQ01000003.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_71, whole genome shotgun sequence 118,007
SZOQ01000004.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_97, whole genome shotgun sequence 101,405
SZOQ01000005.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_101, whole genome shotgun sequence 128,607
SZOQ01000006.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_126, whole genome shotgun sequence 90,357
SZOQ01000007.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_169, whole genome shotgun sequence 79,344
SZOQ01000008.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_200, whole genome shotgun sequence 68,733
SZOQ01000009.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_744, whole genome shotgun sequence 30,694
SZOQ01000010.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_1010, whole genome shotgun sequence 24,148
SZOQ01000011.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_1381, whole genome shotgun sequence 34,757
SZOQ01000012.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_1443, whole genome shotgun sequence 17,661
SZOQ01000013.1 Candidatus Uhrbacteria bacterium UHB ZYPT4scaffold_7171, whole genome shotgun sequence 4,100

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory