fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA349 sp002509745 E21_concoct.bin.137

Genome identifier: GCA_030656015.1

NCBI assembly name: ASM3065601v1

GTDB taxonomy: Archaea, Methanobacteriota, Methanobacteria, Methanobacteriales, Methanobacteriaceae, UBA349, UBA349 sp002509745

NCBI taxonomy: Archaea, Euryarchaeota, Methanobacteria, Methanobacteriales, Methanobacteriaceae

Scaffolds: 14

Genes: 2,325 Protein-coding: 2,262 RNAs: 48 pseudogenes: 15

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAUSNX010000001.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_55216, whole genome shotgun sequence 523,262
JAUSNX010000002.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_294344, whole genome shotgun sequence 97,838
JAUSNX010000003.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_297270, whole genome shotgun sequence 16,213
JAUSNX010000004.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_342769, whole genome shotgun sequence 618,379
JAUSNX010000005.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_63961, whole genome shotgun sequence 3,527
JAUSNX010000006.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_71239, whole genome shotgun sequence 72,226
JAUSNX010000007.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_24506, whole genome shotgun sequence 11,492
JAUSNX010000008.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_24579, whole genome shotgun sequence 16,769
JAUSNX010000009.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_26266, whole genome shotgun sequence 160,108
JAUSNX010000010.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_217868, whole genome shotgun sequence 169,834
JAUSNX010000011.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_179949, whole genome shotgun sequence 57,788
JAUSNX010000012.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_85473, whole genome shotgun sequence 241,042
JAUSNX010000013.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_325377, whole genome shotgun sequence 1,499
JAUSNX010000014.1 MAG: Methanobacteriaceae archaeon isolate E21_concoct.bin.137 E21_k141_233429, whole genome shotgun sequence 375,423

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory