fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAUYVI01 sp030715195 R-7

Genome identifier: GCA_030715195.1

NCBI assembly name: ASM3071519v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Dongiales, Dongiaceae, JAUYVI01, JAUYVI01 sp030715195

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Rhodospirillaceae

Scaffolds: 26

Genes: 5,771 Protein-coding: 5,705 RNAs: 55 pseudogenes: 11

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAUYVI010000001.1 Rhodospirillaceae bacterium R-7 R_7_scaffold1, whole genome shotgun sequence 858,318
JAUYVI010000002.1 Rhodospirillaceae bacterium R-7 R_7_scaffold2, whole genome shotgun sequence 843,945
JAUYVI010000003.1 Rhodospirillaceae bacterium R-7 R_7_scaffold3, whole genome shotgun sequence 769,699
JAUYVI010000004.1 Rhodospirillaceae bacterium R-7 R_7_scaffold4, whole genome shotgun sequence 756,414
JAUYVI010000005.1 Rhodospirillaceae bacterium R-7 R_7_scaffold5, whole genome shotgun sequence 708,160
JAUYVI010000006.1 Rhodospirillaceae bacterium R-7 R_7_scaffold6, whole genome shotgun sequence 655,713
JAUYVI010000007.1 Rhodospirillaceae bacterium R-7 R_7_scaffold7, whole genome shotgun sequence 500,285
JAUYVI010000008.1 Rhodospirillaceae bacterium R-7 R_7_scaffold8, whole genome shotgun sequence 222,410
JAUYVI010000009.1 Rhodospirillaceae bacterium R-7 R_7_scaffold9, whole genome shotgun sequence 222,010
JAUYVI010000010.1 Rhodospirillaceae bacterium R-7 R_7_scaffold10, whole genome shotgun sequence 181,941
JAUYVI010000011.1 Rhodospirillaceae bacterium R-7 R_7_scaffold11, whole genome shotgun sequence 103,330
JAUYVI010000012.1 Rhodospirillaceae bacterium R-7 R_7_scaffold12, whole genome shotgun sequence 84,666
JAUYVI010000013.1 Rhodospirillaceae bacterium R-7 R_7_scaffold13, whole genome shotgun sequence 52,189
JAUYVI010000014.1 Rhodospirillaceae bacterium R-7 R_7_scaffold14, whole genome shotgun sequence 49,253
JAUYVI010000015.1 Rhodospirillaceae bacterium R-7 R_7_scaffold15, whole genome shotgun sequence 41,003
JAUYVI010000016.1 Rhodospirillaceae bacterium R-7 R_7_scaffold16, whole genome shotgun sequence 35,539
JAUYVI010000017.1 Rhodospirillaceae bacterium R-7 R_7_scaffold17, whole genome shotgun sequence 18,045
JAUYVI010000018.1 Rhodospirillaceae bacterium R-7 R_7_scaffold18, whole genome shotgun sequence 15,621
JAUYVI010000019.1 Rhodospirillaceae bacterium R-7 R_7_scaffold19, whole genome shotgun sequence 5,539
JAUYVI010000020.1 Rhodospirillaceae bacterium R-7 R_7_scaffold20, whole genome shotgun sequence 1,206
JAUYVI010000021.1 Rhodospirillaceae bacterium R-7 R_7_scaffold21, whole genome shotgun sequence 1,197
JAUYVI010000022.1 Rhodospirillaceae bacterium R-7 R_7_scaffold22, whole genome shotgun sequence 1,193
JAUYVI010000023.1 Rhodospirillaceae bacterium R-7 R_7_scaffold23, whole genome shotgun sequence 1,175
JAUYVI010000024.1 Rhodospirillaceae bacterium R-7 R_7_scaffold24, whole genome shotgun sequence 1,088
JAUYVI010000025.1 Rhodospirillaceae bacterium R-7 R_7_scaffold25, whole genome shotgun sequence 771
JAUYVI010000026.1 Rhodospirillaceae bacterium R-7 R_7_scaffold26, whole genome shotgun sequence 605

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory