fast.genomicscompare 6,575 genera of bacteria & archaea

 

JANFFA01 sp030848925 10Alg 79

Genome identifier: GCA_030848925.1

NCBI assembly name: ASM3084892v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, JANFFA01, JANFFA01 sp030848925

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae

Scaffolds: 73

Genes: 3,609 Protein-coding: 3,535 RNAs: 48 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JANFFA010000001.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_1_length_1514614_cov_19.298064, whole genome shotgun sequence 1,514,614
JANFFA010000002.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_2_length_702161_cov_22.576032, whole genome shotgun sequence 702,161
JANFFA010000003.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_3_length_643671_cov_20.606079, whole genome shotgun sequence 643,671
JANFFA010000004.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_4_length_358385_cov_19.693479, whole genome shotgun sequence 358,385
JANFFA010000005.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_5_length_297631_cov_21.128918, whole genome shotgun sequence 297,631
JANFFA010000006.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_6_length_151622_cov_21.706734, whole genome shotgun sequence 151,622
JANFFA010000007.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_7_length_46569_cov_22.433989, whole genome shotgun sequence 46,569
JANFFA010000008.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_8_length_6067_cov_55.301336, whole genome shotgun sequence 6,067
JANFFA010000009.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_9_length_1346_cov_0.912530, whole genome shotgun sequence 1,346
JANFFA010000010.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_10_length_1269_cov_1.265940, whole genome shotgun sequence 1,269
JANFFA010000011.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_11_length_1151_cov_1.098696, whole genome shotgun sequence 1,151
JANFFA010000012.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_12_length_1035_cov_1.225470, whole genome shotgun sequence 1,035
JANFFA010000013.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_13_length_915_cov_1.468974, whole genome shotgun sequence 915
JANFFA010000014.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_14_length_889_cov_1.115764, whole genome shotgun sequence 889
JANFFA010000015.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_15_length_779_cov_1.356125, whole genome shotgun sequence 779
JANFFA010000016.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_16_length_725_cov_1.382716, whole genome shotgun sequence 725
JANFFA010000017.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_17_length_725_cov_1.120370, whole genome shotgun sequence 725
JANFFA010000018.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_18_length_688_cov_0.823241, whole genome shotgun sequence 688
JANFFA010000019.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_19_length_670_cov_47.173693, whole genome shotgun sequence 670
JANFFA010000020.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_20_length_668_cov_1.319797, whole genome shotgun sequence 668
JANFFA010000021.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_21_length_660_cov_1.497427, whole genome shotgun sequence 660
JANFFA010000022.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_22_length_659_cov_49.800687, whole genome shotgun sequence 659
JANFFA010000023.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_23_length_659_cov_18.168385, whole genome shotgun sequence 659
JANFFA010000024.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_24_length_646_cov_1.135325, whole genome shotgun sequence 646
JANFFA010000025.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_25_length_635_cov_1.220430, whole genome shotgun sequence 635
JANFFA010000026.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_26_length_602_cov_1.232381, whole genome shotgun sequence 602
JANFFA010000027.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_27_length_600_cov_1.097514, whole genome shotgun sequence 600
JANFFA010000028.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_28_length_596_cov_1.277457, whole genome shotgun sequence 596
JANFFA010000029.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_29_length_595_cov_2.001931, whole genome shotgun sequence 595
JANFFA010000030.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_30_length_590_cov_1.169591, whole genome shotgun sequence 590
JANFFA010000031.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_31_length_582_cov_1.382178, whole genome shotgun sequence 582
JANFFA010000032.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_32_length_568_cov_1.594705, whole genome shotgun sequence 568
JANFFA010000033.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_33_length_560_cov_1.155280, whole genome shotgun sequence 560
JANFFA010000034.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_34_length_552_cov_1.703158, whole genome shotgun sequence 552
JANFFA010000035.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_35_length_552_cov_1.654737, whole genome shotgun sequence 552
JANFFA010000036.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_36_length_543_cov_1.721030, whole genome shotgun sequence 543
JANFFA010000037.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_37_length_531_cov_1.500000, whole genome shotgun sequence 531
JANFFA010000038.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_38_length_510_cov_2.060046, whole genome shotgun sequence 510
JANFFA010000039.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_39_length_494_cov_77.800959, whole genome shotgun sequence 494
JANFFA010000040.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_40_length_493_cov_0.968750, whole genome shotgun sequence 493
JANFFA010000041.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_41_length_481_cov_1.027228, whole genome shotgun sequence 481
JANFFA010000042.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_42_length_471_cov_1.274112, whole genome shotgun sequence 471
JANFFA010000043.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_43_length_466_cov_1.694087, whole genome shotgun sequence 466
JANFFA010000044.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_44_length_438_cov_1.703601, whole genome shotgun sequence 438
JANFFA010000045.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_45_length_433_cov_0.994382, whole genome shotgun sequence 433
JANFFA010000046.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_46_length_425_cov_1.281609, whole genome shotgun sequence 425
JANFFA010000047.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_47_length_424_cov_0.806916, whole genome shotgun sequence 424
JANFFA010000048.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_48_length_411_cov_3.197605, whole genome shotgun sequence 411
JANFFA010000049.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_49_length_411_cov_0.784431, whole genome shotgun sequence 411
JANFFA010000050.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_50_length_408_cov_1.160121, whole genome shotgun sequence 408
JANFFA010000051.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_51_length_406_cov_59.802432, whole genome shotgun sequence 406
JANFFA010000052.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_52_length_401_cov_1.114198, whole genome shotgun sequence 401
JANFFA010000053.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_53_length_395_cov_26.647799, whole genome shotgun sequence 395
JANFFA010000054.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_54_length_383_cov_1.022876, whole genome shotgun sequence 383
JANFFA010000055.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_55_length_381_cov_36.230263, whole genome shotgun sequence 381
JANFFA010000056.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_56_length_370_cov_1.733788, whole genome shotgun sequence 370
JANFFA010000057.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_57_length_359_cov_0.719858, whole genome shotgun sequence 359
JANFFA010000058.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_58_length_349_cov_1.944853, whole genome shotgun sequence 349
JANFFA010000059.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_59_length_343_cov_0.763158, whole genome shotgun sequence 343
JANFFA010000060.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_60_length_340_cov_1.178707, whole genome shotgun sequence 340
JANFFA010000061.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_61_length_334_cov_0.603113, whole genome shotgun sequence 334
JANFFA010000062.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_62_length_332_cov_2.098039, whole genome shotgun sequence 332
JANFFA010000063.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_63_length_318_cov_15.078838, whole genome shotgun sequence 318
JANFFA010000064.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_64_length_315_cov_0.810924, whole genome shotgun sequence 315
JANFFA010000065.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_65_length_310_cov_0.935622, whole genome shotgun sequence 310
JANFFA010000066.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_66_length_277_cov_18.240000, whole genome shotgun sequence 277
JANFFA010000067.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_67_length_266_cov_15.338624, whole genome shotgun sequence 266
JANFFA010000068.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_68_length_227_cov_62.046667, whole genome shotgun sequence 227
JANFFA010000069.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_69_length_218_cov_60.340426, whole genome shotgun sequence 218
JANFFA010000070.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_70_length_212_cov_27.014815, whole genome shotgun sequence 212
JANFFA010000071.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_71_length_212_cov_21.237037, whole genome shotgun sequence 212
JANFFA010000072.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_72_length_210_cov_13.969925, whole genome shotgun sequence 210
JANFFA010000073.1 Rhodoalgimonas zhirmunskyi strain 10Alg 79 NODE_73_length_208_cov_65.198473, whole genome shotgun sequence 208

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory