fast.genomicscompare 6,575 genera of bacteria & archaea

 

Alpha-05 sp900079695 86

Genome identifier: GCA_900079695.1

NCBI assembly name: APW_PRJEB13529_v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Rhodospirillaceae, Alpha-05, Alpha-05 sp900079695

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 3

Genes: 3,918 Protein-coding: 3,834 RNAs: 80 pseudogenes: 4

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
LT599022.1 uncultured alpha proteobacterium isolate 86 genome assembly, scaffold: APW_KL86APRO_scaffold1, whole genome shotgun sequence 4,037,368
LT599023.1 uncultured alpha proteobacterium isolate 86 genome assembly, scaffold: APW_KL86APRO_scaffold2, whole genome shotgun sequence 2,360
LT599024.1 uncultured alpha proteobacterium isolate 86 genome assembly, scaffold: APW_KL86APRO_scaffold3, whole genome shotgun sequence 2,106

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory