fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA1258 sp900100895 YSD2013

Genome identifier: GCA_900100895.1

NCBI assembly name: IMG-taxon 2596583542 annotated assembly

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, UBA1258, UBA1258 sp900100895

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae

Scaffolds: 54

Genes: 2,954 Protein-coding: 2,893 RNAs: 61 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
FMTX01000001.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_NODE_1_len_391_cov_64_598465.50, whole genome shotgun sequence 453
FMTX01000002.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_NODE_3_len_664_cov_61_540661.51, whole genome shotgun sequence 726
FMTX01000003.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_NODE_4_len_854_cov_76_377052.52, whole genome shotgun sequence 916
FMTX01000004.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_NODE_5_len_520_cov_60_853848.53, whole genome shotgun sequence 582
FMTX01000005.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_NODE_6_len_628_cov_67_714966.54, whole genome shotgun sequence 690
FMTX01000006.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00001.1, whole genome shotgun sequence 344,323
FMTX01000007.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00002.2, whole genome shotgun sequence 334,970
FMTX01000008.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00003.3, whole genome shotgun sequence 214,960
FMTX01000009.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00004.4, whole genome shotgun sequence 194,831
FMTX01000010.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00005.5, whole genome shotgun sequence 194,264
FMTX01000011.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00006.6, whole genome shotgun sequence 186,801
FMTX01000012.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00007.7, whole genome shotgun sequence 178,256
FMTX01000013.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00008.8, whole genome shotgun sequence 172,104
FMTX01000014.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00009.9, whole genome shotgun sequence 121,467
FMTX01000015.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00010.10, whole genome shotgun sequence 97,427
FMTX01000016.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00011.11, whole genome shotgun sequence 94,461
FMTX01000017.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00012.12, whole genome shotgun sequence 93,500
FMTX01000018.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00013.13, whole genome shotgun sequence 80,206
FMTX01000019.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00014.14, whole genome shotgun sequence 78,913
FMTX01000020.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00015.15, whole genome shotgun sequence 71,481
FMTX01000021.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00016.16, whole genome shotgun sequence 68,754
FMTX01000022.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00017.17, whole genome shotgun sequence 68,122
FMTX01000023.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00018.18, whole genome shotgun sequence 60,143
FMTX01000024.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00019.19, whole genome shotgun sequence 58,328
FMTX01000025.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00020.20, whole genome shotgun sequence 56,449
FMTX01000026.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00021.21, whole genome shotgun sequence 50,588
FMTX01000027.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00022.22, whole genome shotgun sequence 46,351
FMTX01000028.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00023.23, whole genome shotgun sequence 43,658
FMTX01000029.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00024.24, whole genome shotgun sequence 39,504
FMTX01000030.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00025.25, whole genome shotgun sequence 35,386
FMTX01000031.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00026.26, whole genome shotgun sequence 32,081
FMTX01000032.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00027.27, whole genome shotgun sequence 26,841
FMTX01000033.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00028.28, whole genome shotgun sequence 25,208
FMTX01000034.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00029.29, whole genome shotgun sequence 24,180
FMTX01000035.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00030.30, whole genome shotgun sequence 18,551
FMTX01000036.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00031.31, whole genome shotgun sequence 14,941
FMTX01000037.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00032.32, whole genome shotgun sequence 14,790
FMTX01000038.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00033.33, whole genome shotgun sequence 14,203
FMTX01000039.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00034.34, whole genome shotgun sequence 14,047
FMTX01000040.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00035.35, whole genome shotgun sequence 10,678
FMTX01000041.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00036.36, whole genome shotgun sequence 10,312
FMTX01000042.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00037.37, whole genome shotgun sequence 8,951
FMTX01000043.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00038.38, whole genome shotgun sequence 8,439
FMTX01000044.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00039.39, whole genome shotgun sequence 5,829
FMTX01000045.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00040.40, whole genome shotgun sequence 5,355
FMTX01000046.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00041.41, whole genome shotgun sequence 3,661
FMTX01000047.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00042.42, whole genome shotgun sequence 2,585
FMTX01000048.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00043.43, whole genome shotgun sequence 2,572
FMTX01000049.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00044.44, whole genome shotgun sequence 2,531
FMTX01000050.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00045.45, whole genome shotgun sequence 2,465
FMTX01000051.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00046.46, whole genome shotgun sequence 1,797
FMTX01000052.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00047.47, whole genome shotgun sequence 1,597
FMTX01000053.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00048.48, whole genome shotgun sequence 1,462
FMTX01000054.1 Lachnospiraceae bacterium YSD2013 genome assembly, contig: IE16DRAFT_scaffold00049.49, whole genome shotgun sequence 1,068

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory