fast.genomicscompare 6,575 genera of bacteria & archaea

 

Saccharofermentans sp900107185 YAD3003

Genome identifier: GCA_900107185.1

NCBI assembly name: IMG-taxon 2593339208 annotated assembly

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Saccharofermentanales, Saccharofermentanaceae, Saccharofermentans, Saccharofermentans sp900107185

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Oscillospiraceae

Scaffolds: 30

Genes: 2,411 Protein-coding: 2,344 RNAs: 67 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
FNPA01000001.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00001.1, whole genome shotgun sequence 312,085
FNPA01000002.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00002.2, whole genome shotgun sequence 276,068
FNPA01000003.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00003.3, whole genome shotgun sequence 200,181
FNPA01000004.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00004.4, whole genome shotgun sequence 190,128
FNPA01000005.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00005.5, whole genome shotgun sequence 189,048
FNPA01000006.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00006.6, whole genome shotgun sequence 180,623
FNPA01000007.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00007.7, whole genome shotgun sequence 173,114
FNPA01000008.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00008.8, whole genome shotgun sequence 167,540
FNPA01000009.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00009.9, whole genome shotgun sequence 135,071
FNPA01000010.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00010.10, whole genome shotgun sequence 131,686
FNPA01000011.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00011.11, whole genome shotgun sequence 122,441
FNPA01000012.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00012.12, whole genome shotgun sequence 120,751
FNPA01000013.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00013.13, whole genome shotgun sequence 113,011
FNPA01000014.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00014.14, whole genome shotgun sequence 81,351
FNPA01000015.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00015.15, whole genome shotgun sequence 55,535
FNPA01000016.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00016.16, whole genome shotgun sequence 52,607
FNPA01000017.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00017.17, whole genome shotgun sequence 48,764
FNPA01000018.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00018.18, whole genome shotgun sequence 35,464
FNPA01000019.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00019.19, whole genome shotgun sequence 16,709
FNPA01000020.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00020.20, whole genome shotgun sequence 14,644
FNPA01000021.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00021.21, whole genome shotgun sequence 12,472
FNPA01000022.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00022.22, whole genome shotgun sequence 8,947
FNPA01000023.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00023.23, whole genome shotgun sequence 8,542
FNPA01000024.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00024.24, whole genome shotgun sequence 8,064
FNPA01000025.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00025.25, whole genome shotgun sequence 6,276
FNPA01000026.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00026.26, whole genome shotgun sequence 3,963
FNPA01000027.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00027.27, whole genome shotgun sequence 3,160
FNPA01000028.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00028.28, whole genome shotgun sequence 2,824
FNPA01000029.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00029.29, whole genome shotgun sequence 1,657
FNPA01000030.1 Ruminococcaceae bacterium YAD3003 genome assembly, contig: IE29DRAFT_scaffold00030.30, whole genome shotgun sequence 1,271

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory