fast.genomicscompare 6,575 genera of bacteria & archaea

 

Bovifimicola sp900110975 RM5

Genome identifier: GCA_900110975.1

NCBI assembly name: IMG-taxon 2593339164 annotated assembly

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Bovifimicola, Bovifimicola sp900110975

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae

Scaffolds: 23

Genes: 2,047 Protein-coding: 1,992 RNAs: 55 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
FOFK01000001.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_NODE_2_len_509_cov_64_196465.23, whole genome shotgun sequence 571
FOFK01000002.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00001.1, whole genome shotgun sequence 715,308
FOFK01000003.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00002.2, whole genome shotgun sequence 323,683
FOFK01000004.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00003.3, whole genome shotgun sequence 265,818
FOFK01000005.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00004.4, whole genome shotgun sequence 248,328
FOFK01000006.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00005.5, whole genome shotgun sequence 166,615
FOFK01000007.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00006.6, whole genome shotgun sequence 155,041
FOFK01000008.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00007.7, whole genome shotgun sequence 104,020
FOFK01000009.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00008.8, whole genome shotgun sequence 94,234
FOFK01000010.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00009.9, whole genome shotgun sequence 92,937
FOFK01000011.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00010.10, whole genome shotgun sequence 77,556
FOFK01000012.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00011.11, whole genome shotgun sequence 41,780
FOFK01000013.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00012.12, whole genome shotgun sequence 24,220
FOFK01000014.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00013.13, whole genome shotgun sequence 13,375
FOFK01000015.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00014.14, whole genome shotgun sequence 4,961
FOFK01000016.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00015.15, whole genome shotgun sequence 4,889
FOFK01000017.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00016.16, whole genome shotgun sequence 4,753
FOFK01000018.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00017.17, whole genome shotgun sequence 4,428
FOFK01000019.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00018.18, whole genome shotgun sequence 3,978
FOFK01000020.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00019.19, whole genome shotgun sequence 1,830
FOFK01000021.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00020.20, whole genome shotgun sequence 1,500
FOFK01000022.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00021.21, whole genome shotgun sequence 1,214
FOFK01000023.1 Lachnospiraceae bacterium RM5 genome assembly, contig: IE08DRAFT_scaffold00022.22, whole genome shotgun sequence 1,075

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory