fast.genomicscompare 6,575 genera of bacteria & archaea

 

Fimivivens sp900113995 D5

Genome identifier: GCA_900113995.1

NCBI assembly name: IMG-taxon 2593339255 annotated assembly

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Oscillospirales, Ruminococcaceae, Fimivivens, Fimivivens sp900113995

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Oscillospiraceae

Scaffolds: 49

Genes: 2,552 Protein-coding: 2,501 RNAs: 51 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
FORK01000001.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00001.1, whole genome shotgun sequence 180,886
FORK01000002.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00002.2, whole genome shotgun sequence 163,719
FORK01000003.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00003.3, whole genome shotgun sequence 158,980
FORK01000004.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00004.4, whole genome shotgun sequence 146,345
FORK01000005.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00005.5, whole genome shotgun sequence 128,208
FORK01000006.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00006.6, whole genome shotgun sequence 125,438
FORK01000007.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00007.7, whole genome shotgun sequence 119,377
FORK01000008.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00008.8, whole genome shotgun sequence 117,640
FORK01000009.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00009.9, whole genome shotgun sequence 113,316
FORK01000010.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00010.10, whole genome shotgun sequence 108,808
FORK01000011.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00011.11, whole genome shotgun sequence 108,383
FORK01000012.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00012.12, whole genome shotgun sequence 101,009
FORK01000013.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00013.13, whole genome shotgun sequence 96,176
FORK01000014.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00014.14, whole genome shotgun sequence 92,552
FORK01000015.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00015.15, whole genome shotgun sequence 87,138
FORK01000016.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00016.16, whole genome shotgun sequence 85,387
FORK01000017.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00017.17, whole genome shotgun sequence 75,886
FORK01000018.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00018.18, whole genome shotgun sequence 70,958
FORK01000019.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00019.19, whole genome shotgun sequence 59,289
FORK01000020.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00020.20, whole genome shotgun sequence 58,719
FORK01000021.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00021.21, whole genome shotgun sequence 57,866
FORK01000022.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00022.22, whole genome shotgun sequence 45,464
FORK01000023.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00023.23, whole genome shotgun sequence 43,500
FORK01000024.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00024.24, whole genome shotgun sequence 34,928
FORK01000025.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00025.25, whole genome shotgun sequence 27,939
FORK01000026.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00026.26, whole genome shotgun sequence 26,665
FORK01000027.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00027.27, whole genome shotgun sequence 25,262
FORK01000028.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00028.28, whole genome shotgun sequence 24,302
FORK01000029.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00029.29, whole genome shotgun sequence 20,226
FORK01000030.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00030.30, whole genome shotgun sequence 19,123
FORK01000031.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00031.31, whole genome shotgun sequence 13,582
FORK01000032.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00032.32, whole genome shotgun sequence 13,027
FORK01000033.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00033.33, whole genome shotgun sequence 12,675
FORK01000034.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00034.34, whole genome shotgun sequence 12,458
FORK01000035.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00035.35, whole genome shotgun sequence 11,511
FORK01000036.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00036.36, whole genome shotgun sequence 9,117
FORK01000037.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00037.37, whole genome shotgun sequence 8,237
FORK01000038.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00038.38, whole genome shotgun sequence 6,987
FORK01000039.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00039.39, whole genome shotgun sequence 4,664
FORK01000040.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00040.40, whole genome shotgun sequence 4,325
FORK01000041.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00041.41, whole genome shotgun sequence 2,633
FORK01000042.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00042.42, whole genome shotgun sequence 2,580
FORK01000043.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00043.43, whole genome shotgun sequence 2,206
FORK01000044.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00044.44, whole genome shotgun sequence 1,821
FORK01000045.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00045.45, whole genome shotgun sequence 1,550
FORK01000046.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00046.46, whole genome shotgun sequence 1,518
FORK01000047.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00047.47, whole genome shotgun sequence 1,356
FORK01000048.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00048.48, whole genome shotgun sequence 1,274
FORK01000049.1 Ruminococcaceae bacterium D5 genome assembly, contig: IE26DRAFT_scaffold00049.49, whole genome shotgun sequence 1,003

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory