fast.genomicscompare 6,575 genera of bacteria & archaea

 

XBD2001 sp900116395 XBD2001

Genome identifier: GCA_900116395.1

NCBI assembly name: IMG-taxon 2595698216 annotated assembly

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, XBD2001, XBD2001 sp900116395

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae

Scaffolds: 17

Genes: 2,291 Protein-coding: 2,217 RNAs: 60 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
FPAN01000001.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_NODE_2_len_928_cov_71_396553.17, whole genome shotgun sequence 990
FPAN01000002.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00001.1, whole genome shotgun sequence 678,027
FPAN01000003.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00002.2, whole genome shotgun sequence 408,950
FPAN01000004.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00003.3, whole genome shotgun sequence 326,650
FPAN01000005.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00004.4, whole genome shotgun sequence 252,285
FPAN01000006.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00005.5, whole genome shotgun sequence 229,526
FPAN01000007.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00006.6, whole genome shotgun sequence 210,429
FPAN01000008.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00007.7, whole genome shotgun sequence 172,678
FPAN01000009.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00008.8, whole genome shotgun sequence 73,269
FPAN01000010.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00009.9, whole genome shotgun sequence 69,775
FPAN01000011.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00010.10, whole genome shotgun sequence 24,927
FPAN01000012.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00011.11, whole genome shotgun sequence 19,266
FPAN01000013.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00012.12, whole genome shotgun sequence 8,435
FPAN01000014.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00013.13, whole genome shotgun sequence 1,719
FPAN01000015.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00014.14, whole genome shotgun sequence 1,516
FPAN01000016.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00015.15, whole genome shotgun sequence 1,374
FPAN01000017.1 Lachnospiraceae bacterium XBD2001 genome assembly, contig: IE44DRAFT_scaffold00016.16, whole genome shotgun sequence 1,321

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory