fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rectinema subterraneum bib

Genome identifier: GCA_900163985.1

NCBI assembly name: SPIROBIBN47_PRJEB19364_v1

GTDB taxonomy: Bacteria, Spirochaetota, Spirochaetia, Treponematales, Rectinemataceae, Rectinema, Rectinema subterraneum

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Spirochaetales

Scaffolds: 41

Genes: 2,622 Protein-coding: 2,551 RNAs: 63 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
FWDM01000001.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_1, whole genome shotgun sequence 65,073
FWDM01000002.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_10, whole genome shotgun sequence 235,431
FWDM01000003.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_11, whole genome shotgun sequence 59,639
FWDM01000004.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_12, whole genome shotgun sequence 20,619
FWDM01000005.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_13, whole genome shotgun sequence 67,017
FWDM01000006.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_14, whole genome shotgun sequence 17,284
FWDM01000007.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_15, whole genome shotgun sequence 221,522
FWDM01000008.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_16, whole genome shotgun sequence 2,813
FWDM01000009.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_17, whole genome shotgun sequence 32,395
FWDM01000010.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_18, whole genome shotgun sequence 52,392
FWDM01000011.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_19, whole genome shotgun sequence 64,468
FWDM01000012.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_2, whole genome shotgun sequence 56,914
FWDM01000013.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_20, whole genome shotgun sequence 45,032
FWDM01000014.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_21, whole genome shotgun sequence 239,362
FWDM01000015.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_22, whole genome shotgun sequence 13,744
FWDM01000016.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_23, whole genome shotgun sequence 4,281
FWDM01000017.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_24, whole genome shotgun sequence 72,715
FWDM01000018.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_25, whole genome shotgun sequence 132,963
FWDM01000019.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_26, whole genome shotgun sequence 102,011
FWDM01000020.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_27, whole genome shotgun sequence 63,220
FWDM01000021.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_28, whole genome shotgun sequence 60,500
FWDM01000022.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_29, whole genome shotgun sequence 245,346
FWDM01000023.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_3, whole genome shotgun sequence 40,132
FWDM01000024.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_30, whole genome shotgun sequence 18,043
FWDM01000025.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_31, whole genome shotgun sequence 105,715
FWDM01000026.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_32, whole genome shotgun sequence 6,791
FWDM01000027.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_33, whole genome shotgun sequence 29,391
FWDM01000028.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_34, whole genome shotgun sequence 81,340
FWDM01000029.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_35, whole genome shotgun sequence 88,639
FWDM01000030.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_36, whole genome shotgun sequence 39,859
FWDM01000031.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_37, whole genome shotgun sequence 36,793
FWDM01000032.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_38, whole genome shotgun sequence 73,940
FWDM01000033.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_39, whole genome shotgun sequence 28,208
FWDM01000034.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_4, whole genome shotgun sequence 5,450
FWDM01000035.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_40, whole genome shotgun sequence 45,088
FWDM01000036.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_41, whole genome shotgun sequence 78,491
FWDM01000037.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_5, whole genome shotgun sequence 105,683
FWDM01000038.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_6, whole genome shotgun sequence 26,376
FWDM01000039.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_7, whole genome shotgun sequence 9,989
FWDM01000040.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_8, whole genome shotgun sequence 46,301
FWDM01000041.1 uncultured spirochete isolate bib genome assembly, contig: SPIROBIBN47_Contig_9, whole genome shotgun sequence 73,987

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory