fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA5623 sp900258555 TRIP AH-1

Genome identifier: GCA_900258555.1

NCBI assembly name: PITCH_PRJEB24717_v1

GTDB taxonomy: Bacteria, Desulfobacterota, DSM-4660, Desulfatiglandales, Desulfatiglandaceae, UBA5623, UBA5623 sp900258555

NCBI taxonomy: Bacteria, Thermodesulfobacteriota, Desulfobacteria, Desulfobacterales, Desulfobacteriaceae, Desulfobacterium

Scaffolds: 28

Genes: 4,873 Protein-coding: 4,796 RNAs: 61 pseudogenes: 16

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
LT984854.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold1, whole genome shotgun sequence 2,631,610
LT984855.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold2, whole genome shotgun sequence 1,064,637
LT984856.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold3, whole genome shotgun sequence 835,786
LT984857.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold4, whole genome shotgun sequence 707,394
LT984858.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold5, whole genome shotgun sequence 27,991
LT984859.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold6, whole genome shotgun sequence 19,803
LT984860.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold7, whole genome shotgun sequence 17,660
LT984861.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold8, whole genome shotgun sequence 17,560
LT984862.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold9, whole genome shotgun sequence 13,741
LT984863.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold10, whole genome shotgun sequence 13,358
LT984864.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold11, whole genome shotgun sequence 9,081
LT984865.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold12, whole genome shotgun sequence 12,028
LT984866.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold13, whole genome shotgun sequence 9,518
LT984867.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold14, whole genome shotgun sequence 8,306
LT984868.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold15, whole genome shotgun sequence 7,064
LT984869.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold16, whole genome shotgun sequence 4,899
LT984870.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold17, whole genome shotgun sequence 4,887
LT984871.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold18, whole genome shotgun sequence 3,869
LT984872.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold19, whole genome shotgun sequence 2,707
LT984873.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold20, whole genome shotgun sequence 2,694
LT984874.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold21, whole genome shotgun sequence 2,644
LT984875.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold22, whole genome shotgun sequence 1,730
LT984876.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold23, whole genome shotgun sequence 1,570
LT984877.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold24, whole genome shotgun sequence 1,422
LT984878.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold25, whole genome shotgun sequence 1,422
LT984879.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold26, whole genome shotgun sequence 1,211
LT984880.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold27, whole genome shotgun sequence 1,024
LT984881.1 uncultured Desulfobacterium sp. isolate TRIP AH-1 genome assembly, scaffold: PITCH_a_scaffold28, whole genome shotgun sequence 1,012

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory