fast.genomicscompare 6,575 genera of bacteria & archaea

 

Defluviicoccus seviourii none

Genome identifier: GCA_900609035.2

NCBI assembly name: Ca.D.seviourii

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales_A, UXAT02, Defluviicoccus, Defluviicoccus seviourii

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Rhodospirillaceae, Defluviicoccus, Candidatus Defluviicoccus seviourii

Scaffolds: 54

Genes: 3,342 Protein-coding: 3,221 RNAs: 115 pseudogenes: 6

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
UXAT02000001.1 metagenome genome assembly, contig: DF3PA_Contig_1, whole genome shotgun sequence 290,482
UXAT02000002.1 metagenome genome assembly, contig: DF3PA_Contig_10, whole genome shotgun sequence 124,439
UXAT02000003.1 metagenome genome assembly, contig: DF3PA_Contig_11, whole genome shotgun sequence 121,652
UXAT02000004.1 metagenome genome assembly, contig: DF3PA_Contig_12, whole genome shotgun sequence 109,542
UXAT02000005.1 metagenome genome assembly, contig: DF3PA_Contig_13, whole genome shotgun sequence 107,760
UXAT02000006.1 metagenome genome assembly, contig: DF3PA_Contig_14, whole genome shotgun sequence 106,650
UXAT02000007.1 metagenome genome assembly, contig: DF3PA_Contig_15, whole genome shotgun sequence 93,906
UXAT02000008.1 metagenome genome assembly, contig: DF3PA_Contig_16, whole genome shotgun sequence 84,778
UXAT02000009.1 metagenome genome assembly, contig: DF3PA_Contig_17, whole genome shotgun sequence 75,796
UXAT02000010.1 metagenome genome assembly, contig: DF3PA_Contig_18, whole genome shotgun sequence 75,018
UXAT02000011.1 metagenome genome assembly, contig: DF3PA_Contig_19, whole genome shotgun sequence 72,164
UXAT02000012.1 metagenome genome assembly, contig: DF3PA_Contig_2, whole genome shotgun sequence 216,503
UXAT02000013.1 metagenome genome assembly, contig: DF3PA_Contig_20, whole genome shotgun sequence 62,654
UXAT02000014.1 metagenome genome assembly, contig: DF3PA_Contig_21, whole genome shotgun sequence 57,013
UXAT02000015.1 metagenome genome assembly, contig: DF3PA_Contig_22, whole genome shotgun sequence 53,872
UXAT02000016.1 metagenome genome assembly, contig: DF3PA_Contig_23, whole genome shotgun sequence 52,034
UXAT02000017.1 metagenome genome assembly, contig: DF3PA_Contig_24, whole genome shotgun sequence 43,740
UXAT02000018.1 metagenome genome assembly, contig: DF3PA_Contig_25, whole genome shotgun sequence 36,601
UXAT02000019.1 metagenome genome assembly, contig: DF3PA_Contig_26, whole genome shotgun sequence 31,537
UXAT02000020.1 metagenome genome assembly, contig: DF3PA_Contig_27, whole genome shotgun sequence 29,133
UXAT02000021.1 metagenome genome assembly, contig: DF3PA_Contig_28, whole genome shotgun sequence 28,667
UXAT02000022.1 metagenome genome assembly, contig: DF3PA_Contig_29, whole genome shotgun sequence 27,006
UXAT02000023.1 metagenome genome assembly, contig: DF3PA_Contig_3, whole genome shotgun sequence 201,826
UXAT02000024.1 metagenome genome assembly, contig: DF3PA_Contig_30, whole genome shotgun sequence 25,966
UXAT02000025.1 metagenome genome assembly, contig: DF3PA_Contig_31, whole genome shotgun sequence 25,431
UXAT02000026.1 metagenome genome assembly, contig: DF3PA_Contig_32, whole genome shotgun sequence 20,950
UXAT02000027.1 metagenome genome assembly, contig: DF3PA_Contig_33, whole genome shotgun sequence 20,441
UXAT02000028.1 metagenome genome assembly, contig: DF3PA_Contig_34, whole genome shotgun sequence 17,665
UXAT02000029.1 metagenome genome assembly, contig: DF3PA_Contig_35, whole genome shotgun sequence 16,668
UXAT02000030.1 metagenome genome assembly, contig: DF3PA_Contig_36, whole genome shotgun sequence 15,590
UXAT02000031.1 metagenome genome assembly, contig: DF3PA_Contig_37, whole genome shotgun sequence 13,730
UXAT02000032.1 metagenome genome assembly, contig: DF3PA_Contig_38, whole genome shotgun sequence 13,717
UXAT02000033.1 metagenome genome assembly, contig: DF3PA_Contig_39, whole genome shotgun sequence 10,477
UXAT02000034.1 metagenome genome assembly, contig: DF3PA_Contig_4, whole genome shotgun sequence 201,211
UXAT02000035.1 metagenome genome assembly, contig: DF3PA_Contig_40, whole genome shotgun sequence 9,954
UXAT02000036.1 metagenome genome assembly, contig: DF3PA_Contig_41, whole genome shotgun sequence 8,316
UXAT02000037.1 metagenome genome assembly, contig: DF3PA_Contig_42, whole genome shotgun sequence 7,819
UXAT02000038.1 metagenome genome assembly, contig: DF3PA_Contig_43, whole genome shotgun sequence 5,683
UXAT02000039.1 metagenome genome assembly, contig: DF3PA_Contig_44, whole genome shotgun sequence 4,822
UXAT02000040.1 metagenome genome assembly, contig: DF3PA_Contig_45, whole genome shotgun sequence 3,946
UXAT02000041.1 metagenome genome assembly, contig: DF3PA_Contig_46, whole genome shotgun sequence 3,866
UXAT02000042.1 metagenome genome assembly, contig: DF3PA_Contig_47, whole genome shotgun sequence 2,283
UXAT02000043.1 metagenome genome assembly, contig: DF3PA_Contig_48, whole genome shotgun sequence 1,951
UXAT02000044.1 metagenome genome assembly, contig: DF3PA_Contig_49, whole genome shotgun sequence 1,863
UXAT02000045.1 metagenome genome assembly, contig: DF3PA_Contig_5, whole genome shotgun sequence 162,417
UXAT02000046.1 metagenome genome assembly, contig: DF3PA_Contig_50, whole genome shotgun sequence 1,602
UXAT02000047.1 metagenome genome assembly, contig: DF3PA_Contig_51, whole genome shotgun sequence 1,409
UXAT02000048.1 metagenome genome assembly, contig: DF3PA_Contig_52, whole genome shotgun sequence 1,333
UXAT02000049.1 metagenome genome assembly, contig: DF3PA_Contig_53, whole genome shotgun sequence 1,197
UXAT02000050.1 metagenome genome assembly, contig: DF3PA_Contig_54, whole genome shotgun sequence 1,139
UXAT02000051.1 metagenome genome assembly, contig: DF3PA_Contig_6, whole genome shotgun sequence 156,806
UXAT02000052.1 metagenome genome assembly, contig: DF3PA_Contig_7, whole genome shotgun sequence 146,468
UXAT02000053.1 metagenome genome assembly, contig: DF3PA_Contig_8, whole genome shotgun sequence 141,030
UXAT02000054.1 metagenome genome assembly, contig: DF3PA_Contig_9, whole genome shotgun sequence 139,823

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory