fast.genomicscompare 6,575 genera of bacteria & archaea

 

Dinoroseobacter shibae DFL 12

Genome identifier: GCF_000018145.1

NCBI assembly name: ASM1814v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Dinoroseobacter, Dinoroseobacter shibae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Dinoroseobacter, Dinoroseobacter shibae

Scaffolds: 6

Genes: 4,328 Protein-coding: 4,219 RNAs: 54 pseudogenes: 55

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NC_009952.1 Dinoroseobacter shibae DFL 12 = DSM 16493, complete sequence 3,789,584
NC_009955.1 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI01, complete sequence 190,506
NC_009956.1 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence 152,970
NC_009957.1 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI03, complete sequence 126,304
NC_009958.1 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04, complete sequence 86,208
NC_009959.1 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI05, complete sequence 72,296

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory