fast.genomicscompare 6,575 genera of bacteria & archaea

 

Peptoniphilus_B duerdenii ATCC BAA-1640

Genome identifier: GCF_000146345.1

NCBI assembly name: ASM14634v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Tissierellales, Peptoniphilaceae, Peptoniphilus_B, Peptoniphilus_B duerdenii

NCBI taxonomy: Bacteria, Bacillota, Tissierellia, Tissierellales, Peptoniphilaceae, Peptoniphilus, Peptoniphilus duerdenii

Scaffolds: 16

Genes: 1,951 Protein-coding: 1,888 RNAs: 31 pseudogenes: 32

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_GL397071.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD1, whole genome shotgun sequence 2,106,333
NZ_GL397072.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD2, whole genome shotgun sequence 2,201
NZ_GL397073.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD3, whole genome shotgun sequence 3,139
NZ_GL397074.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD4, whole genome shotgun sequence 1,722
NZ_GL397075.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD5, whole genome shotgun sequence 1,582
NZ_GL397076.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD6, whole genome shotgun sequence 1,371
NZ_GL397077.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD7, whole genome shotgun sequence 1,343
NZ_GL397078.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD8, whole genome shotgun sequence 1,068
NZ_GL397079.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD9, whole genome shotgun sequence 933
NZ_GL397080.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD10, whole genome shotgun sequence 932
NZ_GL397081.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD11, whole genome shotgun sequence 869
NZ_GL397082.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD12, whole genome shotgun sequence 781
NZ_GL397083.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD13, whole genome shotgun sequence 707
NZ_GL397084.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD14, whole genome shotgun sequence 669
NZ_GL397085.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD15, whole genome shotgun sequence 629
NZ_GL397086.1 Peptoniphilus duerdenii ATCC BAA-1640 SCAFFOLD16, whole genome shotgun sequence 565

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory